Antimicrobial Peptide Card

General Information
Docking with LptB2FG protein
dbAMP ID dbAMP_28463 (AntiGram-)
Residues 8
Sequence RLYRKVYG
Receptor Area near lipopolysaccharides
Score
Basic Information
dbAMP ID dbAMP_28463
Name RLYRKVYG
Length 8
Activity Antibacterial Antifungal 
Sequence RLYRKVYG
Experimental Evidence NO
PubMed 11846794
Composition Information


Antibacterial Activities
dbAMP ID dbAMP_28463
Activity Antibacterial Antifungal 

Pane, K., et al., Antimicrobial potency of cationic antimicrobial peptides can be predicted from their amino acid composition: Application to the detection of "cryptic" antimicrobial peptides. J Theor Biol, 2017. 419: p. 254-265.
Physico-chemical Properties
dbAMP ID dbAMP_28463
Residues 8
Sequence RLYRKVYG
Molecular Weight 1054.26
Net Charge 3 Isoelectric Point 10.6486
charge Density 3.994 Aliphatic Index 85
Aromaticity Index 0.25 hydrophobic Ratio 0.796552
Histograms of physico-chemical properties
Hydropathy plots
Protein-Protein Interaction
Domain-Domain Interactions Interacting Protein Gene Name Interaction Type PPI Reference

There are no interacting protiens for the queried protein.
Structural View
dbAMP ID dbAMP_28463
Sequence RLYRKVYG
UniProtAC None
PDB None
Target
Predicted Structure (ESMFold)
Secondary Structure
Download structure information
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Representative Structure PDB Download
Contact Map TXT Download
Contact Map PNG Download
Secondary Structure DSSP Download
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