CircRNA Information

General Information
circRNA Basic Information
CircID chr10:100548964|100549133
Strand +
CircType exon
Host Gene ENSG00000166135.12;
Algorism CIRI2;
Sequence CTTGGTAAGTAGGGAGGCTGGCCAGTGTGGACACACACACACACACACACGGACACACACACACACACGCACGCACACACACACACACACCCAGAGGCTTGCACCCCTAGTGTGGATACGCACACACAGACACACACAAACAAACACACAGAGGCTTGCACCCCTAGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:100548964|100549133 hsa-miR-210-5p 0 0 1
chr10:100548964|100549133 hsa-miR-210-3p 0 0 1
chr10:100548964|100549133 hsa-miR-326 0 0 1
chr10:100548964|100549133 hsa-miR-193b-5p 0 0 1
chr10:100548964|100549133 hsa-miR-193b-3p 0 0 1
chr10:100548964|100549133 hsa-miR-599 0 0 1
chr10:100548964|100549133 hsa-miR-609 0 0 1
chr10:100548964|100549133 hsa-miR-342-5p 1 1 1
chr10:100548964|100549133 hsa-miR-330-5p 0 1 1
chr10:100548964|100549133 hsa-miR-193a-3p 0 0 1
chr10:100548964|100549133 hsa-miR-147 0 0 1
chr10:100548964|100549133 hsa-miR-637 1 1 0
chr10:100548964|100549133 hsa-miR-760 1 0 0
chr10:100548964|100549133 hsa-miR-297 1 0 0
chr10:100548964|100549133 hsa-miR-4455 1 1 0
chr10:100548964|100549133 hsa-miR-3972 1 0 0
chr10:100548964|100549133 hsa-miR-5572 1 1 0
chr10:100548964|100549133 hsa-miR-504-3p 1 0 0
chr10:100548964|100549133 hsa-miR-6861-5p 1 0 0
chr10:100548964|100549133 hsa-miR-3692-3p 0 1 0
chr10:100548964|100549133 hsa-miR-6867-5p 0 1 0
chr10:100548964|100549133 hsa-miR-3064-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6741-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6776-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6772-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6732-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6782-5p 1 1 0
chr10:100548964|100549133 hsa-miR-6858-3p 1 1 0
chr10:100548964|100549133 hsa-miR-7109-3p 0 1 0
chr10:100548964|100549133 hsa-miR-6757-3p 0 1 0
chr10:100548964|100549133 hsa-miR-574-5p 1 1 0
chr10:100548964|100549133 hsa-miR-3190-5p 0 1 0
chr10:100548964|100549133 hsa-miR-6778-3p 0 1 0
chr10:100548964|100549133 hsa-miR-4704-5p 0 1 0
chr10:100548964|100549133 hsa-miR-6752-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6803-5p 1 1 0
chr10:100548964|100549133 hsa-miR-6842-5p 1 0 0
chr10:100548964|100549133 hsa-miR-7110-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6751-5p 1 0 0
chr10:100548964|100549133 hsa-miR-328-5p 1 0 0
chr10:100548964|100549133 hsa-miR-4701-3p 1 0 0
chr10:100548964|100549133 hsa-miR-4697-5p 1 0 0
chr10:100548964|100549133 hsa-miR-4664-5p 0 1 0
chr10:100548964|100549133 hsa-miR-6790-5p 1 0 0
chr10:100548964|100549133 hsa-miR-4757-5p 1 0 0
chr10:100548964|100549133 hsa-miR-6811-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:100548964|100549133
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence LVSREAGQCGHTHTHTRTHTHTRTHTHTHTQRLAPLVWIRTHRHTQTNTQRLAPLE
Nucleotide Sequence TTGGTAAGTAGGGAGGCTGGCCAGTGTGGACACACACACACACACACACGGACACACACACACACACGCACGCACACACACACACACACCCAGAGGCTTGCACCCCTAGTGTGGATACGCACACACAGACACACACAAACAAACACACAGAGGCTTGCACCCCTAGAA
CircID chr10:100548964|100549133
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MASVDTHTHTHGHTHTHARTHTHTPRGLHP
Nucleotide Sequence CTGGCCAGTGTGGACACACACACACACACACACGGACACACACACACACACGCACGCACACACACACACACACCCAGAGGCTTGCACCCCTAG
CircID chr10:100548964|100549133
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MFVCVCVCVSTLGVQASGCVCVCACVCVCVSVCVCVCVHTGQPPYLP
Nucleotide Sequence TTGTTTGTGTGTGTCTGTGTGTGCGTATCCACACTAGGGGTGCAAGCCTCTGGGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTCCACACTGGCCAGCCTCCCTACTTACCA
CircID chr10:100548964|100549133
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MGVCVCVRACVCVCPCVCVCVSTLASLPTYQ
Nucleotide Sequence CTGGGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTCCACACTGGCCAGCCTCCCTACTTACCAA
CircID chr10:100548964|100549133
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MCVRIHTRGASLWVCVCVCVRVCVCVRVCVCVCPHWPASLLTK
Nucleotide Sequence CTGTGTGTGCGTATCCACACTAGGGGTGCAAGCCTCTGGGTGTGTGTGTGTGTGTGCGTGCGTGTGTGTGTGTGTGTCCGTGTGTGTGTGTGTGTGTGTCCACACTGGCCAGCCTCCCTACTTACCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab