CircRNA Information

General Information
circRNA Basic Information
CircID chr10:101065108|101065234
Strand +
CircType exon
Host Gene ENSG00000107821.13;
Algorism CIRI2;
Sequence CTCTGTGTCTGCTCAGGCCCCCACCCCAGCCTGGGAAACAACCTGTTGGAGGTCCTACTGGCCAGGGCATCTCCTGCATGGGCCCCTTTGTACCCCACCGGTCCTGGTCTCAGCTTCTCTCCCTACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:101065108|101065234 hsa-miR-185-5p 0 0 1
chr10:101065108|101065234 hsa-miR-185-3p 0 0 1
chr10:101065108|101065234 hsa-miR-608 0 1 1
chr10:101065108|101065234 hsa-miR-874-5p 0 0 1
chr10:101065108|101065234 hsa-miR-874-3p 0 0 1
chr10:101065108|101065234 hsa-miR-1286 0 0 1
chr10:101065108|101065234 hsa-miR-1321 0 0 1
chr10:101065108|101065234 hsa-miR-769-5p 0 0 1
chr10:101065108|101065234 hsa-miR-146b-3p 0 0 1
chr10:101065108|101065234 hsa-miR-524-5p 0 0 1
chr10:101065108|101065234 hsa-miR-342-5p 0 0 1
chr10:101065108|101065234 hsa-miR-520d-5p 0 1 1
chr10:101065108|101065234 hsa-miR-325 0 1 0
chr10:101065108|101065234 hsa-miR-637 1 0 0
chr10:101065108|101065234 hsa-miR-762 1 1 0
chr10:101065108|101065234 hsa-miR-1275 1 0 0
chr10:101065108|101065234 hsa-miR-3170 1 0 0
chr10:101065108|101065234 hsa-miR-3175 1 1 0
chr10:101065108|101065234 hsa-miR-3936 0 1 0
chr10:101065108|101065234 hsa-miR-4463 1 0 0
chr10:101065108|101065234 hsa-miR-4466 1 0 0
chr10:101065108|101065234 hsa-miR-4505 0 1 0
chr10:101065108|101065234 hsa-miR-4641 0 1 0
chr10:101065108|101065234 hsa-miR-4644 0 1 0
chr10:101065108|101065234 hsa-miR-4651 1 0 0
chr10:101065108|101065234 hsa-miR-4656 1 0 0
chr10:101065108|101065234 hsa-miR-4663 1 0 0
chr10:101065108|101065234 hsa-miR-4688 1 0 0
chr10:101065108|101065234 hsa-miR-4739 1 0 0
chr10:101065108|101065234 hsa-miR-5572 1 1 0
chr10:101065108|101065234 hsa-miR-5787 1 1 0
chr10:101065108|101065234 hsa-miR-8085 1 1 0
chr10:101065108|101065234 hsa-miR-8089 1 0 0
chr10:101065108|101065234 hsa-miR-4435 0 1 0
chr10:101065108|101065234 hsa-miR-92a-2-5p 0 1 0
chr10:101065108|101065234 hsa-miR-6840-3p 1 0 0
chr10:101065108|101065234 hsa-miR-7155-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6747-5p 1 0 0
chr10:101065108|101065234 hsa-miR-4786-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6757-5p 1 0 0
chr10:101065108|101065234 hsa-miR-4722-5p 1 1 0
chr10:101065108|101065234 hsa-miR-7160-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6890-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6742-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6796-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6798-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6760-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6881-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6782-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6874-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6888-5p 0 1 0
chr10:101065108|101065234 hsa-miR-6786-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6835-5p 0 1 0
chr10:101065108|101065234 hsa-miR-4787-5p 1 0 0
chr10:101065108|101065234 hsa-miR-3160-3p 1 1 0
chr10:101065108|101065234 hsa-miR-149-3p 1 0 0
chr10:101065108|101065234 hsa-miR-3162-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6781-5p 1 0 0
chr10:101065108|101065234 hsa-miR-4776-5p 1 0 0
chr10:101065108|101065234 hsa-miR-3190-5p 0 1 0
chr10:101065108|101065234 hsa-miR-532-5p 0 1 0
chr10:101065108|101065234 hsa-miR-7844-5p 1 0 0
chr10:101065108|101065234 hsa-miR-1207-5p 1 0 0
chr10:101065108|101065234 hsa-miR-4763-3p 1 0 0
chr10:101065108|101065234 hsa-miR-6769b-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6787-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6812-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6737-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6743-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6752-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6756-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6769a-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6803-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6819-5p 1 1 0
chr10:101065108|101065234 hsa-miR-7110-5p 1 0 0
chr10:101065108|101065234 hsa-miR-1249-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6722-3p 1 0 0
chr10:101065108|101065234 hsa-miR-6763-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6780a-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6797-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6808-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6879-5p 1 0 0
chr10:101065108|101065234 hsa-miR-7111-5p 1 0 0
chr10:101065108|101065234 hsa-miR-3620-5p 1 0 0
chr10:101065108|101065234 hsa-miR-10526-3p 0 1 0
chr10:101065108|101065234 hsa-miR-1237-5p 1 0 0
chr10:101065108|101065234 hsa-miR-328-5p 1 0 0
chr10:101065108|101065234 hsa-miR-4685-5p 1 1 0
chr10:101065108|101065234 hsa-miR-6738-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6846-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6848-5p 1 0 0
chr10:101065108|101065234 hsa-miR-4697-5p 1 0 0
chr10:101065108|101065234 hsa-miR-4723-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6885-5p 0 1 0
chr10:101065108|101065234 hsa-miR-6855-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6766-5p 1 0 0
chr10:101065108|101065234 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:101065108|101065234
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MGNNLLEVLLARASPAWAPLYPTGPGLSFSPY
Nucleotide Sequence CTGGGAAACAACCTGTTGGAGGTCCTACTGGCCAGGGCATCTCCTGCATGGGCCCCTTTGTACCCCACCGGTCCTGGTCTCAGCTTCTCTCCCTAC
CircID chr10:101065108|101065234
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence LCLLRPPPQPGKQPVGGPTGQGISCMGPFVPHRSWSQLLSL
Nucleotide Sequence CTGTGTCTGCTCAGGCCCCCACCCCAGCCTGGGAAACAACCTGTTGGAGGTCCTACTGGCCAGGGCATCTCCTGCATGGGCCCCTTTGTACCCCACCGGTCCTGGTCTCAGCTTCTCTCCCTA
CircID chr10:101065108|101065234
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MQEMPWPVGPPTGCFPGWGGGLSRHR
Nucleotide Sequence ATGCAGGAGATGCCCTGGCCAGTAGGACCTCCAACAGGTTGTTTCCCAGGCTGGGGTGGGGGCCTGAGCAGACACAGA
CircID chr10:101065108|101065234
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MRPGPVGYKGAHAGDALASRTSNRLFPRLGWGPEQTQ
Nucleotide Sequence CTGAGACCAGGACCGGTGGGGTACAAAGGGGCCCATGCAGGAGATGCCCTGGCCAGTAGGACCTCCAACAGGTTGTTTCCCAGGCTGGGGTGGGGGCCTGAGCAGACACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab