CircRNA Information

General Information
circRNA Basic Information
CircID chr10:102479390|102479574
Strand -
CircType exon
Host Gene ENSG00000138107.10;
Algorism CIRI2;
Sequence CTGCTGCTGTGGCCCACACCTGGCAGGGGCCTTTGGTCATAGGACGGCGTGGGGGAGAATACTGTGTGAAGTCTGGGATTGGGGTGGGTCTTGGTGTCACAGGTGAGGGTGCCGGTGAAGACAGGCTGGCCCCAGCTTTGCACCATCTAGGCTGAAGGCCTTTGGACCACTCCTAGGAGTCAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:102479390|102479574 hsa-miR-15a-5p 0 0 1
chr10:102479390|102479574 hsa-miR-15a-3p 0 0 1
chr10:102479390|102479574 hsa-miR-19a-5p 0 0 1
chr10:102479390|102479574 hsa-miR-19a-3p 0 0 1
chr10:102479390|102479574 hsa-miR-15b-5p 0 0 1
chr10:102479390|102479574 hsa-miR-15b-3p 0 0 1
chr10:102479390|102479574 hsa-miR-144-5p 0 0 1
chr10:102479390|102479574 hsa-miR-144-3p 0 0 1
chr10:102479390|102479574 hsa-miR-195-5p 0 0 1
chr10:102479390|102479574 hsa-miR-195-3p 0 0 1
chr10:102479390|102479574 hsa-miR-320a-5p 0 0 1
chr10:102479390|102479574 hsa-miR-320a-3p 0 0 1
chr10:102479390|102479574 hsa-miR-377-5p 0 0 1
chr10:102479390|102479574 hsa-miR-377-3p 0 0 1
chr10:102479390|102479574 hsa-miR-345-5p 0 0 1
chr10:102479390|102479574 hsa-miR-345-3p 0 0 1
chr10:102479390|102479574 hsa-miR-424-5p 0 0 1
chr10:102479390|102479574 hsa-miR-424-3p 0 0 1
chr10:102479390|102479574 hsa-miR-412-5p 0 0 1
chr10:102479390|102479574 hsa-miR-412-3p 0 0 1
chr10:102479390|102479574 hsa-miR-497-5p 0 0 1
chr10:102479390|102479574 hsa-miR-497-3p 0 0 1
chr10:102479390|102479574 hsa-miR-527 0 0 1
chr10:102479390|102479574 hsa-miR-630 0 0 1
chr10:102479390|102479574 hsa-miR-361-3p 0 0 1
chr10:102479390|102479574 hsa-miR-320b 0 1 1
chr10:102479390|102479574 hsa-miR-320c 0 1 1
chr10:102479390|102479574 hsa-miR-320d 0 1 1
chr10:102479390|102479574 hsa-miR-518a-5p 0 0 1
chr10:102479390|102479574 hsa-miR-542-3p 0 0 1
chr10:102479390|102479574 hsa-miR-16 0 0 1
chr10:102479390|102479574 hsa-miR-19b 0 0 1
chr10:102479390|102479574 hsa-miR-662 1 0 0
chr10:102479390|102479574 hsa-miR-1245a 0 1 0
chr10:102479390|102479574 hsa-miR-320e 0 1 0
chr10:102479390|102479574 hsa-miR-4322 0 1 0
chr10:102479390|102479574 hsa-miR-4265 0 1 0
chr10:102479390|102479574 hsa-miR-4429 0 1 0
chr10:102479390|102479574 hsa-miR-4647 0 1 0
chr10:102479390|102479574 hsa-miR-6749-3p 1 0 0
chr10:102479390|102479574 hsa-miR-214-5p 0 1 0
chr10:102479390|102479574 hsa-miR-210-5p 0 1 0
chr10:102479390|102479574 hsa-miR-3934-5p 1 1 0
chr10:102479390|102479574 hsa-miR-1227-5p 0 1 0
chr10:102479390|102479574 hsa-miR-6840-5p 1 0 0
chr10:102479390|102479574 hsa-miR-6849-3p 0 1 0
chr10:102479390|102479574 hsa-miR-7110-3p 1 0 0
chr10:102479390|102479574 hsa-miR-6845-3p 1 0 0
chr10:102479390|102479574 hsa-miR-5008-5p 1 0 0
chr10:102479390|102479574 hsa-miR-4733-5p 0 1 0
chr10:102479390|102479574 hsa-miR-4713-5p 1 0 0
chr10:102479390|102479574 hsa-miR-532-3p 1 0 0
chr10:102479390|102479574 hsa-miR-6763-3p 1 0 0
chr10:102479390|102479574 hsa-miR-5571-3p 0 1 0
chr10:102479390|102479574 hsa-miR-3180-5p 1 0 0
chr10:102479390|102479574 hsa-miR-1180-5p 1 1 0
chr10:102479390|102479574 hsa-miR-6872-3p 1 0 0
chr10:102479390|102479574 hsa-miR-6768-3p 0 1 0
chr10:102479390|102479574 hsa-miR-3162-3p 1 0 0
chr10:102479390|102479574 hsa-miR-3913-3p 0 1 0
chr10:102479390|102479574 hsa-miR-6754-3p 0 1 0
chr10:102479390|102479574 hsa-miR-6845-5p 0 1 0
chr10:102479390|102479574 hsa-miR-6762-5p 0 1 0
chr10:102479390|102479574 hsa-miR-6792-3p 1 0 0
chr10:102479390|102479574 hsa-miR-6862-3p 1 0 0
chr10:102479390|102479574 hsa-miR-10401-3p 1 0 0
chr10:102479390|102479574 hsa-miR-6801-3p 0 1 0
chr10:102479390|102479574 hsa-miR-6718-5p 0 1 0
chr10:102479390|102479574 hsa-miR-7114-3p 1 1 0
chr10:102479390|102479574 hsa-miR-5699-3p 0 1 0
chr10:102479390|102479574 hsa-miR-342-3p 0 1 0
chr10:102479390|102479574 hsa-miR-203b-5p 0 1 0
chr10:102479390|102479574 hsa-miR-1245b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:102479390|102479574
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MGLGWVLVSQVRVPVKTGWPQLCTI
Nucleotide Sequence CTGGGATTGGGGTGGGTCTTGGTGTCACAGGTGAGGGTGCCGGTGAAGACAGGCTGGCCCCAGCTTTGCACCATCTAG
CircID chr10:102479390|102479574
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MAGAFGHRTAWGRILCEVWDWGGSWCHR
Nucleotide Sequence CTGGCAGGGGCCTTTGGTCATAGGACGGCGTGGGGGAGAATACTGTGTGAAGTCTGGGATTGGGGTGGGTCTTGGTGTCACAGGTGA
CircID chr10:102479390|102479574
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MVIGRRGGEYCVKSGIGVGLGVTGEGAGEDRLAPALHHLG
Nucleotide Sequence TTGGTCATAGGACGGCGTGGGGGAGAATACTGTGTGAAGTCTGGGATTGGGGTGGGTCTTGGTGTCACAGGTGAGGGTGCCGGTGAAGACAGGCTGGCCCCAGCTTTGCACCATCTAGGCTGA
CircID chr10:102479390|102479574
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MVQSWGQPVFTGTLTCDTKTHPNPRLHTVFSPTPSYDQRPLPGVGHSS
Nucleotide Sequence ATGGTGCAAAGCTGGGGCCAGCCTGTCTTCACCGGCACCCTCACCTGTGACACCAAGACCCACCCCAATCCCAGACTTCACACAGTATTCTCCCCCACGCCGTCCTATGACCAAAGGCCCCTGCCAGGTGTGGGCCACAGCAGC
CircID chr10:102479390|102479574
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MSSPAPSPVTPRPTPIPDFTQYSPPRRPMTKGPCQVWATAA
Nucleotide Sequence CTGTCTTCACCGGCACCCTCACCTGTGACACCAAGACCCACCCCAATCCCAGACTTCACACAGTATTCTCCCCCACGCCGTCCTATGACCAAAGGCCCCTGCCAGGTGTGGGCCACAGCAGCA
CircID chr10:102479390|102479574
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence LTPRSGPKAFSLDGAKLGPACLHRHPHL
Nucleotide Sequence CTGACTCCTAGGAGTGGTCCAAAGGCCTTCAGCCTAGATGGTGCAAAGCTGGGGCCAGCCTGTCTTCACCGGCACCCTCACCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab