CircRNA Information

General Information
circRNA Basic Information
CircID chr10:102656447|102656694
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGCCTTCCCTCCAAGAGGCAGTGTGGCCCAGTCTGGGAGACCTGTCCTCATATCCAGGCTTTGCCACTTGTAGCTGTGGGACAGTGGGTAAGCAACATGACCTCCCCAGCCTCCATTTCTTCAGCTTAAAGTGGGGATATAACTATTCTGTACCTCCTAATGGTAGAGGAGCAAGCATCACCTGAGATGTAACATTCTTGGGCCTCTAGGTGTCAATGGTCCCCAGGTCCAACCCAGGGAGAGGAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:102656447|102656694 hsa-miR-150-5p 0 0 1
chr10:102656447|102656694 hsa-miR-150-3p 0 0 1
chr10:102656447|102656694 hsa-miR-492 1 1 1
chr10:102656447|102656694 hsa-miR-432-5p 0 0 1
chr10:102656447|102656694 hsa-miR-432-3p 0 0 1
chr10:102656447|102656694 hsa-miR-631 0 0 1
chr10:102656447|102656694 hsa-miR-650 0 0 1
chr10:102656447|102656694 hsa-miR-939-5p 0 0 1
chr10:102656447|102656694 hsa-miR-939-3p 0 0 1
chr10:102656447|102656694 hsa-miR-1266-5p 0 0 1
chr10:102656447|102656694 hsa-miR-1266-3p 0 0 1
chr10:102656447|102656694 hsa-miR-125a-3p 0 0 1
chr10:102656447|102656694 hsa-miR-1224-5p 0 0 1
chr10:102656447|102656694 hsa-miR-532-3p 0 0 1
chr10:102656447|102656694 hsa-miR-485-5p 0 0 1
chr10:102656447|102656694 hsa-miR-188-3p 0 0 1
chr10:102656447|102656694 hsa-miR-514 0 0 1
chr10:102656447|102656694 hsa-miR-1254 0 0 1
chr10:102656447|102656694 hsa-miR-768-5p 0 0 1
chr10:102656447|102656694 hsa-miR-636 1 0 0
chr10:102656447|102656694 hsa-miR-762 1 0 0
chr10:102656447|102656694 hsa-miR-4268 0 1 0
chr10:102656447|102656694 hsa-miR-4292 0 1 0
chr10:102656447|102656694 hsa-miR-3661 1 1 0
chr10:102656447|102656694 hsa-miR-4443 0 1 0
chr10:102656447|102656694 hsa-miR-4498 1 0 0
chr10:102656447|102656694 hsa-miR-4507 1 1 0
chr10:102656447|102656694 hsa-miR-4535 0 1 0
chr10:102656447|102656694 hsa-miR-4651 1 0 0
chr10:102656447|102656694 hsa-miR-4791 0 1 0
chr10:102656447|102656694 hsa-miR-5093 1 1 0
chr10:102656447|102656694 hsa-miR-5193 0 1 0
chr10:102656447|102656694 hsa-miR-5787 1 0 0
chr10:102656447|102656694 hsa-miR-6069 1 0 0
chr10:102656447|102656694 hsa-miR-6086 0 1 0
chr10:102656447|102656694 hsa-miR-6088 1 0 0
chr10:102656447|102656694 hsa-miR-6124 1 0 0
chr10:102656447|102656694 hsa-miR-8089 1 1 0
chr10:102656447|102656694 hsa-miR-12115 1 0 0
chr10:102656447|102656694 hsa-miR-12126 1 1 0
chr10:102656447|102656694 hsa-miR-4731-5p 0 1 0
chr10:102656447|102656694 hsa-miR-3150a-3p 0 1 0
chr10:102656447|102656694 hsa-miR-6861-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6825-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6089 1 0 0
chr10:102656447|102656694 hsa-miR-6810-5p 0 1 0
chr10:102656447|102656694 hsa-miR-4713-5p 0 1 0
chr10:102656447|102656694 hsa-miR-1229-5p 1 0 0
chr10:102656447|102656694 hsa-miR-296-3p 1 0 0
chr10:102656447|102656694 hsa-miR-6749-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6742-3p 0 1 0
chr10:102656447|102656694 hsa-miR-2276-3p 0 1 0
chr10:102656447|102656694 hsa-miR-450a-2-3p 0 1 0
chr10:102656447|102656694 hsa-miR-6760-3p 0 1 0
chr10:102656447|102656694 hsa-miR-5004-5p 0 1 0
chr10:102656447|102656694 hsa-miR-3144-5p 0 1 0
chr10:102656447|102656694 hsa-miR-4796-3p 0 1 0
chr10:102656447|102656694 hsa-miR-4802-5p 0 1 0
chr10:102656447|102656694 hsa-miR-3688-5p 0 1 0
chr10:102656447|102656694 hsa-miR-1273h-5p 1 0 0
chr10:102656447|102656694 hsa-miR-4763-3p 1 0 0
chr10:102656447|102656694 hsa-miR-6816-5p 1 0 0
chr10:102656447|102656694 hsa-miR-1343-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6726-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6756-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6813-5p 1 0 0
chr10:102656447|102656694 hsa-miR-7107-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6780a-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6797-5p 0 1 0
chr10:102656447|102656694 hsa-miR-3620-5p 1 0 0
chr10:102656447|102656694 hsa-miR-328-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6846-5p 1 0 0
chr10:102656447|102656694 hsa-miR-6848-5p 1 1 0
chr10:102656447|102656694 hsa-miR-3940-5p 0 1 0
chr10:102656447|102656694 hsa-miR-6791-3p 0 1 0
chr10:102656447|102656694 hsa-miR-4700-5p 0 1 0
chr10:102656447|102656694 hsa-miR-3679-5p 1 0 0
chr10:102656447|102656694 hsa-miR-4667-5p 0 1 0
chr10:102656447|102656694 hsa-miR-6791-5p 1 1 0
chr10:102656447|102656694 hsa-miR-6884-5p 1 1 0
chr10:102656447|102656694 hsa-miR-514b-3p 0 1 0
chr10:102656447|102656694 hsa-miR-4782-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:102656447|102656694
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MGDLSSYPGFATCSCGTVGKQHDLPSLHFFSLKWGYNYSVPPNGRGASIT
Nucleotide Sequence CTGGGAGACCTGTCCTCATATCCAGGCTTTGCCACTTGTAGCTGTGGGACAGTGGGTAAGCAACATGACCTCCCCAGCCTCCATTTCTTCAGCTTAAAGTGGGGATATAACTATTCTGTACCTCCTAATGGTAGAGGAGCAAGCATCACCTGA
CircID chr10:102656447|102656694
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MKKWRLGRSCCLPTVPQLQVAKPGYEDRSPRLGHTASWREG
Nucleotide Sequence CTGAAGAAATGGAGGCTGGGGAGGTCATGTTGCTTACCCACTGTCCCACAGCTACAAGTGGCAAAGCCTGGATATGAGGACAGGTCTCCCAGACTGGGCCACACTGCCTCTTGGAGGGAAGGC
CircID chr10:102656447|102656694
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MSHSYKWQSLDMRTGLPDWATLPLGGKA
Nucleotide Sequence CTGTCCCACAGCTACAAGTGGCAAAGCCTGGATATGAGGACAGGTCTCCCAGACTGGGCCACACTGCCTCTTGGAGGGAAGGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab