CircRNA Information

General Information
circRNA Basic Information
CircID chr10:103594482|103594699
Strand +
CircType exon
Host Gene ENSG00000107957.15;
Algorism CIRI2;
Sequence AGCAAAACAGCCACCCTCCTTGAATTTACAACTCATTATCTGCAACAGGTTTTCTTTAAATCCAAGACACAGGATGGGAAATGGGTTTCCCCACCAGGTACTCAGAGGTCTGCAGGAAGTGACTCCCGGGCAAGGCAGACTTCAGTAATCCCTGAAGCGTGAGCATGTGGACTGCATGGCTGGGTGGGGACTGGTGGATGTCTCTGGAGCTCCAGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:103594482|103594699 hsa-miR-186-5p 0 0 1
chr10:103594482|103594699 hsa-miR-186-3p 0 0 1
chr10:103594482|103594699 hsa-miR-346 1 0 1
chr10:103594482|103594699 hsa-miR-431-5p 0 0 1
chr10:103594482|103594699 hsa-miR-431-3p 0 0 1
chr10:103594482|103594699 hsa-miR-432-5p 0 0 1
chr10:103594482|103594699 hsa-miR-432-3p 0 0 1
chr10:103594482|103594699 hsa-miR-571 0 0 1
chr10:103594482|103594699 hsa-miR-619-5p 0 0 1
chr10:103594482|103594699 hsa-miR-619-3p 0 0 1
chr10:103594482|103594699 hsa-miR-649 0 0 1
chr10:103594482|103594699 hsa-miR-660-5p 0 0 1
chr10:103594482|103594699 hsa-miR-660-3p 0 0 1
chr10:103594482|103594699 hsa-miR-541-5p 0 0 1
chr10:103594482|103594699 hsa-miR-541-3p 0 0 1
chr10:103594482|103594699 hsa-miR-1178-5p 0 0 1
chr10:103594482|103594699 hsa-miR-1178-3p 0 0 1
chr10:103594482|103594699 hsa-miR-1290 0 0 1
chr10:103594482|103594699 hsa-miR-1299 0 0 1
chr10:103594482|103594699 hsa-miR-491-5p 0 1 1
chr10:103594482|103594699 hsa-miR-654-5p 0 0 1
chr10:103594482|103594699 hsa-miR-525-5p 0 1 1
chr10:103594482|103594699 hsa-miR-520a-5p 0 0 1
chr10:103594482|103594699 hsa-miR-455-3p 0 1 1
chr10:103594482|103594699 hsa-miR-876-5p 0 0 1
chr10:103594482|103594699 hsa-miR-516b 0 0 1
chr10:103594482|103594699 hsa-miR-219-1-3p 0 0 1
chr10:103594482|103594699 hsa-miR-554 1 1 0
chr10:103594482|103594699 hsa-miR-2110 0 1 0
chr10:103594482|103594699 hsa-miR-4254 1 0 0
chr10:103594482|103594699 hsa-miR-3907 1 0 0
chr10:103594482|103594699 hsa-miR-3921 0 1 0
chr10:103594482|103594699 hsa-miR-4683 1 0 0
chr10:103594482|103594699 hsa-miR-12128 0 1 0
chr10:103594482|103594699 hsa-miR-500b-3p 0 1 0
chr10:103594482|103594699 hsa-miR-6861-5p 1 0 0
chr10:103594482|103594699 hsa-miR-769-5p 0 1 0
chr10:103594482|103594699 hsa-miR-6849-3p 1 0 0
chr10:103594482|103594699 hsa-miR-1909-5p 1 0 0
chr10:103594482|103594699 hsa-miR-5001-3p 1 1 0
chr10:103594482|103594699 hsa-miR-6830-5p 1 0 0
chr10:103594482|103594699 hsa-miR-941 1 1 0
chr10:103594482|103594699 hsa-miR-516b-5p 0 1 0
chr10:103594482|103594699 hsa-miR-3074-5p 0 1 0
chr10:103594482|103594699 hsa-miR-6754-5p 1 0 0
chr10:103594482|103594699 hsa-miR-498-5p 1 0 0
chr10:103594482|103594699 hsa-miR-6891-5p 0 1 0
chr10:103594482|103594699 hsa-miR-6862-3p 0 1 0
chr10:103594482|103594699 hsa-miR-6500-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:103594482|103594699
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MQQVFFKSKTQDGKWVSPPGTQRSAGSDSRARQTSVIPEA
Nucleotide Sequence CTGCAACAGGTTTTCTTTAAATCCAAGACACAGGATGGGAAATGGGTTTCCCCACCAGGTACTCAGAGGTCTGCAGGAAGTGACTCCCGGGCAAGGCAGACTTCAGTAATCCCTGAAGCGTGA
CircID chr10:103594482|103594699
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MNLQLIICNRFSLNPRHRMGNGFPHQVLRGLQEVTPGQGRLQ
Nucleotide Sequence TTGAATTTACAACTCATTATCTGCAACAGGTTTTCTTTAAATCCAAGACACAGGATGGGAAATGGGTTTCCCCACCAGGTACTCAGAGGTCTGCAGGAAGTGACTCCCGGGCAAGGCAGACTTCAGTAA
CircID chr10:103594482|103594699
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MELQRHPPVPTQPCSPHAHASGITEVCLARESLPADL
Nucleotide Sequence CTGGAGCTCCAGAGACATCCACCAGTCCCCACCCAGCCATGCAGTCCACATGCTCACGCTTCAGGGATTACTGAAGTCTGCCTTGCCCGGGAGTCACTTCCTGCAGACCTCTGA
CircID chr10:103594482|103594699
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MLTLQGLLKSALPGSHFLQTSEYLVGKPISHPVSWI
Nucleotide Sequence ATGCTCACGCTTCAGGGATTACTGAAGTCTGCCTTGCCCGGGAGTCACTTCCTGCAGACCTCTGAGTACCTGGTGGGGAAACCCATTTCCCATCCTGTGTCTTGGATTTAA
CircID chr10:103594482|103594699
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MPCPGVTSCRPLSTWWGNPFPILCLGFKENLLQIMSCKFKEGGCFA
Nucleotide Sequence CTGCCTTGCCCGGGAGTCACTTCCTGCAGACCTCTGAGTACCTGGTGGGGAAACCCATTTCCCATCCTGTGTCTTGGATTTAAAGAAAACCTGTTGCAGATAATGAGTTGTAAATTCAAGGAGGGTGGCTGTTTTGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab