CircRNA Information

General Information
circRNA Basic Information
CircID chr10:103595807|103595964
Strand -
CircType exon
Host Gene ENSG00000107957.15;
Algorism CIRI2;
Sequence CTTGGAAGGTAGGGCTCTCCACCCAGTCTGTAAGCACCAGTGTGCCCACCTTATGGCCTGGGGACCCAGGTTTGCAGGAGGGAAGTTAACAGTGGGGCTGTTTTTCCCCAAAGCTGTGGGTCACTGATCCTGTCTTCTCACTGGCTCTGATCATGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:103595807|103595964 hsa-miR-18a-5p 0 0 1
chr10:103595807|103595964 hsa-miR-18a-3p 0 0 1
chr10:103595807|103595964 hsa-miR-185-5p 0 0 1
chr10:103595807|103595964 hsa-miR-185-3p 0 0 1
chr10:103595807|103595964 hsa-miR-383-5p 0 0 1
chr10:103595807|103595964 hsa-miR-383-3p 0 0 1
chr10:103595807|103595964 hsa-miR-18b-5p 0 0 1
chr10:103595807|103595964 hsa-miR-18b-3p 0 0 1
chr10:103595807|103595964 hsa-miR-575 0 0 1
chr10:103595807|103595964 hsa-miR-600 1 0 1
chr10:103595807|103595964 hsa-miR-541-5p 0 0 1
chr10:103595807|103595964 hsa-miR-541-3p 0 0 1
chr10:103595807|103595964 hsa-miR-1208 0 0 1
chr10:103595807|103595964 hsa-miR-1293 0 0 1
chr10:103595807|103595964 hsa-miR-1253 0 0 1
chr10:103595807|103595964 hsa-miR-490-3p 0 0 1
chr10:103595807|103595964 hsa-miR-654-5p 0 0 1
chr10:103595807|103595964 hsa-miR-1233 0 0 1
chr10:103595807|103595964 hsa-miR-642 0 0 1
chr10:103595807|103595964 hsa-miR-1300 0 0 1
chr10:103595807|103595964 hsa-miR-661 1 0 0
chr10:103595807|103595964 hsa-miR-764 1 0 0
chr10:103595807|103595964 hsa-miR-921 0 1 0
chr10:103595807|103595964 hsa-miR-1976 0 1 0
chr10:103595807|103595964 hsa-miR-2110 0 1 0
chr10:103595807|103595964 hsa-miR-548q 0 1 0
chr10:103595807|103595964 hsa-miR-4276 0 1 0
chr10:103595807|103595964 hsa-miR-3907 1 0 0
chr10:103595807|103595964 hsa-miR-3135b 1 0 0
chr10:103595807|103595964 hsa-miR-4463 1 0 0
chr10:103595807|103595964 hsa-miR-4689 1 0 0
chr10:103595807|103595964 hsa-miR-6076 1 0 0
chr10:103595807|103595964 hsa-miR-138-5p 1 0 0
chr10:103595807|103595964 hsa-miR-15a-3p 0 1 0
chr10:103595807|103595964 hsa-miR-1233-3p 0 1 0
chr10:103595807|103595964 hsa-miR-6741-5p 1 0 0
chr10:103595807|103595964 hsa-miR-3189-5p 1 0 0
chr10:103595807|103595964 hsa-miR-491-5p 0 1 0
chr10:103595807|103595964 hsa-miR-4697-3p 1 0 0
chr10:103595807|103595964 hsa-miR-7109-5p 1 0 0
chr10:103595807|103595964 hsa-miR-4640-5p 1 0 0
chr10:103595807|103595964 hsa-miR-3922-5p 1 0 0
chr10:103595807|103595964 hsa-miR-660-3p 0 1 0
chr10:103595807|103595964 hsa-miR-4758-3p 0 1 0
chr10:103595807|103595964 hsa-miR-6801-5p 1 0 0
chr10:103595807|103595964 hsa-miR-6856-3p 0 1 0
chr10:103595807|103595964 hsa-miR-5591-3p 1 0 0
chr10:103595807|103595964 hsa-miR-6769b-5p 1 0 0
chr10:103595807|103595964 hsa-miR-6775-5p 1 0 0
chr10:103595807|103595964 hsa-miR-6737-5p 1 0 0
chr10:103595807|103595964 hsa-miR-6756-5p 1 0 0
chr10:103595807|103595964 hsa-miR-6769a-5p 1 0 0
chr10:103595807|103595964 hsa-miR-6819-5p 1 0 0
chr10:103595807|103595964 hsa-miR-4755-5p 0 1 0
chr10:103595807|103595964 hsa-miR-7151-3p 1 0 0
chr10:103595807|103595964 hsa-miR-6766-5p 1 0 0
chr10:103595807|103595964 hsa-miR-4676-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:103595807|103595964
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MGTQVCRREVNSGAVFPQSCGSLILSSHWL
Nucleotide Sequence CTGGGGACCCAGGTTTGCAGGAGGGAAGTTAACAGTGGGGCTGTTTTTCCCCAAAGCTGTGGGTCACTGATCCTGTCTTCTCACTGGCTCTGA
CircID chr10:103595807|103595964
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence LEGRALHPVCKHQCAHLMAWGPRFAGGKLTVGLFFPKAVGH
Nucleotide Sequence TTGGAAGGTAGGGCTCTCCACCCAGTCTGTAAGCACCAGTGTGCCCACCTTATGGCCTGGGGACCCAGGTTTGCAGGAGGGAAGTTAACAGTGGGGCTGTTTTTCCCCAAAGCTGTGGGTCACTGA
CircID chr10:103595807|103595964
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MGKNSPTVNFPPANLGPQAIRWAHWCLQTGWRALPSK
Nucleotide Sequence TTGGGGAAAAACAGCCCCACTGTTAACTTCCCTCCTGCAAACCTGGGTCCCCAGGCCATAAGGTGGGCACACTGGTGCTTACAGACTGGGTGGAGAGCCCTACCTTCCAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab