CircRNA Information

General Information
circRNA Basic Information
CircID chr10:112470395|112470498
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTTGCTTGCCTTCCTCCGTTCTTGCTCTGAAAACCTGTTCCCACACTCCAAATCTCTATGCTTTTCTGCACTACAGTATAAAAGCTTCAGTTATGTGGCCCTA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:112470395|112470498 hsa-miR-122-5p 0 0 1
chr10:112470395|112470498 hsa-miR-122-3p 0 0 1
chr10:112470395|112470498 hsa-miR-130a-5p 0 0 1
chr10:112470395|112470498 hsa-miR-130a-3p 0 0 1
chr10:112470395|112470498 hsa-miR-301a-5p 0 0 1
chr10:112470395|112470498 hsa-miR-301a-3p 0 0 1
chr10:112470395|112470498 hsa-miR-130b-5p 0 0 1
chr10:112470395|112470498 hsa-miR-130b-3p 0 0 1
chr10:112470395|112470498 hsa-miR-1296-5p 0 0 1
chr10:112470395|112470498 hsa-miR-1296-3p 0 0 1
chr10:112470395|112470498 hsa-miR-454-5p 0 0 1
chr10:112470395|112470498 hsa-miR-454-3p 0 0 1
chr10:112470395|112470498 hsa-miR-298 0 0 1
chr10:112470395|112470498 hsa-miR-301b-5p 0 0 1
chr10:112470395|112470498 hsa-miR-301b-3p 0 0 1
chr10:112470395|112470498 hsa-miR-1183 0 1 1
chr10:112470395|112470498 hsa-miR-1292-5p 0 0 1
chr10:112470395|112470498 hsa-miR-1292-3p 0 0 1
chr10:112470395|112470498 hsa-miR-127-5p 0 0 1
chr10:112470395|112470498 hsa-miR-574-5p 0 0 1
chr10:112470395|112470498 hsa-miR-142-3p 0 0 1
chr10:112470395|112470498 hsa-miR-768-5p 0 0 1
chr10:112470395|112470498 hsa-miR-1270 1 0 0
chr10:112470395|112470498 hsa-miR-4298 1 0 0
chr10:112470395|112470498 hsa-miR-3911 1 0 0
chr10:112470395|112470498 hsa-miR-3916 1 0 0
chr10:112470395|112470498 hsa-miR-4658 1 0 0
chr10:112470395|112470498 hsa-miR-4748 1 0 0
chr10:112470395|112470498 hsa-miR-5192 1 0 0
chr10:112470395|112470498 hsa-miR-5572 1 0 0
chr10:112470395|112470498 hsa-miR-8089 1 0 0
chr10:112470395|112470498 hsa-miR-12120 1 0 0
chr10:112470395|112470498 hsa-miR-135a-3p 1 1 0
chr10:112470395|112470498 hsa-miR-504-3p 1 0 0
chr10:112470395|112470498 hsa-miR-6747-5p 1 1 0
chr10:112470395|112470498 hsa-miR-197-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6796-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6760-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6810-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6740-5p 1 0 0
chr10:112470395|112470498 hsa-miR-193b-5p 1 0 0
chr10:112470395|112470498 hsa-miR-4640-5p 1 0 0
chr10:112470395|112470498 hsa-miR-3127-5p 1 0 0
chr10:112470395|112470498 hsa-miR-4732-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6830-5p 1 0 0
chr10:112470395|112470498 hsa-miR-3162-5p 1 0 0
chr10:112470395|112470498 hsa-miR-4773 1 0 0
chr10:112470395|112470498 hsa-miR-6501-3p 1 0 0
chr10:112470395|112470498 hsa-miR-1233-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6778-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6812-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6726-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6752-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6756-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6803-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6819-5p 1 0 0
chr10:112470395|112470498 hsa-miR-7110-5p 1 0 0
chr10:112470395|112470498 hsa-miR-10401-5p 1 1 0
chr10:112470395|112470498 hsa-miR-1249-5p 1 0 0
chr10:112470395|112470498 hsa-miR-5196-5p 1 0 0
chr10:112470395|112470498 hsa-miR-4726-5p 1 0 0
chr10:112470395|112470498 hsa-miR-4749-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6795-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6887-5p 1 0 0
chr10:112470395|112470498 hsa-miR-4723-5p 1 0 0
chr10:112470395|112470498 hsa-miR-4769-5p 1 0 0
chr10:112470395|112470498 hsa-miR-1266-5p 1 0 0
chr10:112470395|112470498 hsa-miR-3198 1 0 0
chr10:112470395|112470498 hsa-miR-6855-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6876-5p 1 1 0
chr10:112470395|112470498 hsa-miR-6891-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6750-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6766-5p 1 0 0
chr10:112470395|112470498 hsa-miR-6790-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:112470395|112470498
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MPSSVLALKTCSHTPNLYAFLHYSIKASVMWP
Nucleotide Sequence TTGCCTTCCTCCGTTCTTGCTCTGAAAACCTGTTCCCACACTCCAAATCTCTATGCTTTTCTGCACTACAGTATAAAAGCTTCAGTTATGTGGCCC
CircID chr10:112470395|112470498
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence LLAFLRSCSENLFPHSKSLCFSALQYKSFSYVAL
Nucleotide Sequence TTGCTTGCCTTCCTCCGTTCTTGCTCTGAAAACCTGTTCCCACACTCCAAATCTCTATGCTTTTCTGCACTACAGTATAAAAGCTTCAGTTATGTGGCCCTA
CircID chr10:112470395|112470498
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MKLLYCSAEKHRDLECGNRFSEQERRKASK
Nucleotide Sequence CTGAAGCTTTTATACTGTAGTGCAGAAAAGCATAGAGATTTGGAGTGTGGGAACAGGTTTTCAGAGCAAGAACGGAGGAAGGCAAGCAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab