CircRNA Information

General Information
circRNA Basic Information
CircID chr10:116887895|116888084
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AACAGAACAAATGATCAACTACTGAGCAAAAGTAACCTGCATGACCCGGTCACGGGCACAAAACCTCAAACCCAAAGACCACACTGCTTTTTTCACTTTCTGACCAGTACTGTAAGATCTGTCCAAATGTTTAAAAACCACTCCCTCTGGCTACTGGGTTATATTACCTATGTGTGGCTCGGTCATCATC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:116887895|116888084 hsa-miR-144-5p 0 0 1
chr10:116887895|116888084 hsa-miR-144-3p 0 0 1
chr10:116887895|116888084 hsa-miR-375-5p 0 0 1
chr10:116887895|116888084 hsa-miR-375-3p 0 0 1
chr10:116887895|116888084 hsa-miR-410-5p 0 0 1
chr10:116887895|116888084 hsa-miR-410-3p 0 0 1
chr10:116887895|116888084 hsa-miR-575 1 0 1
chr10:116887895|116888084 hsa-miR-579-5p 0 0 1
chr10:116887895|116888084 hsa-miR-579-3p 0 0 1
chr10:116887895|116888084 hsa-miR-600 0 0 1
chr10:116887895|116888084 hsa-miR-629-5p 0 0 1
chr10:116887895|116888084 hsa-miR-629-3p 0 0 1
chr10:116887895|116888084 hsa-miR-657 0 0 1
chr10:116887895|116888084 hsa-miR-936 0 0 1
chr10:116887895|116888084 hsa-miR-1178-5p 0 0 1
chr10:116887895|116888084 hsa-miR-1178-3p 0 0 1
chr10:116887895|116888084 hsa-miR-1304-5p 0 0 1
chr10:116887895|116888084 hsa-miR-1304-3p 0 0 1
chr10:116887895|116888084 hsa-miR-1272 0 1 1
chr10:116887895|116888084 hsa-miR-1278 0 0 1
chr10:116887895|116888084 hsa-miR-140-5p 0 0 1
chr10:116887895|116888084 hsa-miR-615-3p 0 0 1
chr10:116887895|116888084 hsa-miR-582-5p 0 0 1
chr10:116887895|116888084 hsa-miR-1244 0 0 1
chr10:116887895|116888084 hsa-miR-199b-3p 0 0 1
chr10:116887895|116888084 hsa-miR-199a-3p 0 0 1
chr10:116887895|116888084 hsa-miR-9 0 0 1
chr10:116887895|116888084 hsa-miR-1826 0 0 1
chr10:116887895|116888084 hsa-miR-101 0 0 1
chr10:116887895|116888084 hsa-miR-198 1 0 0
chr10:116887895|116888084 hsa-miR-608 1 1 0
chr10:116887895|116888084 hsa-miR-658 1 0 0
chr10:116887895|116888084 hsa-miR-2113 0 1 0
chr10:116887895|116888084 hsa-miR-1293 1 0 0
chr10:116887895|116888084 hsa-miR-2278 1 0 0
chr10:116887895|116888084 hsa-miR-3147 1 0 0
chr10:116887895|116888084 hsa-miR-3188 1 0 0
chr10:116887895|116888084 hsa-miR-3911 1 0 0
chr10:116887895|116888084 hsa-miR-1268b 1 0 0
chr10:116887895|116888084 hsa-miR-4510 1 1 0
chr10:116887895|116888084 hsa-miR-548an 1 1 0
chr10:116887895|116888084 hsa-miR-4651 1 0 0
chr10:116887895|116888084 hsa-miR-4692 1 0 0
chr10:116887895|116888084 hsa-miR-4739 1 0 0
chr10:116887895|116888084 hsa-miR-5698 1 0 0
chr10:116887895|116888084 hsa-miR-6127 1 1 0
chr10:116887895|116888084 hsa-miR-6129 1 1 0
chr10:116887895|116888084 hsa-miR-6130 1 1 0
chr10:116887895|116888084 hsa-miR-6131 1 0 0
chr10:116887895|116888084 hsa-miR-6133 1 0 0
chr10:116887895|116888084 hsa-miR-6165 1 0 0
chr10:116887895|116888084 hsa-miR-203a-5p 0 1 0
chr10:116887895|116888084 hsa-miR-4433b-3p 1 0 0
chr10:116887895|116888084 hsa-miR-6747-5p 1 0 0
chr10:116887895|116888084 hsa-miR-3692-5p 1 0 0
chr10:116887895|116888084 hsa-miR-3677-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6732-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6827-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6798-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6760-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6782-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6514-5p 1 0 0
chr10:116887895|116888084 hsa-miR-5006-5p 1 0 0
chr10:116887895|116888084 hsa-miR-7161-3p 0 1 0
chr10:116887895|116888084 hsa-miR-6847-5p 1 0 0
chr10:116887895|116888084 hsa-miR-4787-5p 1 0 0
chr10:116887895|116888084 hsa-miR-193a-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6499-3p 1 0 0
chr10:116887895|116888084 hsa-miR-6801-5p 0 1 0
chr10:116887895|116888084 hsa-miR-584-5p 1 0 0
chr10:116887895|116888084 hsa-miR-3179 1 0 0
chr10:116887895|116888084 hsa-miR-4520-2-3p 0 1 0
chr10:116887895|116888084 hsa-miR-4763-3p 1 0 0
chr10:116887895|116888084 hsa-miR-6870-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6737-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6752-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6803-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6842-5p 1 1 0
chr10:116887895|116888084 hsa-miR-7110-5p 1 0 0
chr10:116887895|116888084 hsa-miR-10401-5p 1 0 0
chr10:116887895|116888084 hsa-miR-1249-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6751-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6763-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6797-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6875-5p 1 0 0
chr10:116887895|116888084 hsa-miR-7111-5p 1 0 0
chr10:116887895|116888084 hsa-miR-449c-5p 1 0 0
chr10:116887895|116888084 hsa-miR-4726-5p 1 0 0
chr10:116887895|116888084 hsa-miR-4745-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6777-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6794-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6855-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6849-5p 1 0 0
chr10:116887895|116888084 hsa-miR-6724-5p 1 0 0
chr10:116887895|116888084 hsa-miR-520a-5p 1 0 0
chr10:116887895|116888084 hsa-miR-3130-5p 0 1 0
chr10:116887895|116888084 hsa-miR-4676-5p 1 0 0
chr10:116887895|116888084 hsa-miR-4482-5p 0 1 0
chr10:116887895|116888084 hsa-miR-383-5p 1 0 0
chr10:116887895|116888084 hsa-miR-200a-5p 0 1 0
chr10:116887895|116888084 hsa-miR-4789-3p 0 1 0
chr10:116887895|116888084 hsa-miR-548ah-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr10:116887895|116888084
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence MSKSNLHDPVTGTKPQTQRPHCFFHFLTSTVRSVQMFKNHSLWLLGYITYVWLGHH
Nucleotide Sequence CTGAGCAAAAGTAACCTGCATGACCCGGTCACGGGCACAAAACCTCAAACCCAAAGACCACACTGCTTTTTTCACTTTCTGACCAGTACTGTAAGATCTGTCCAAATGTTTAAAAACCACTCCCTCTGGCTACTGGGTTATATTACCTATGTGTGGCTCGGTCATCAT
CircID chr10:116887895|116888084
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MDRSYSTGQKVKKAVWSLGLRFCARDRVMQVTFAQ
Nucleotide Sequence TTGGACAGATCTTACAGTACTGGTCAGAAAGTGAAAAAAGCAGTGTGGTCTTTGGGTTTGAGGTTTTGTGCCCGTGACCGGGTCATGCAGGTTACTTTTGCTCAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab