CircRNA Information

General Information
circRNA Basic Information
CircID chr10:119042305|119042417
Strand -
CircType exon
Host Gene ENSG00000107581.11;
Algorism CIRI2;
Sequence CCTCGCCTGGGACCCCGGTCATCATCAGCATTACGCCAGGATGATCGCTCATCATCAGCGCCTCCTCGCCTCGGCCCCCGGTCATCATCCATCCCACGTCTTGGTCCTCTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:119042305|119042417 hsa-miR-155-5p 0 0 1
chr10:119042305|119042417 hsa-miR-155-3p 0 0 1
chr10:119042305|119042417 hsa-miR-1255a 0 0 1
chr10:119042305|119042417 hsa-miR-1272 0 1 1
chr10:119042305|119042417 hsa-miR-615-5p 0 1 1
chr10:119042305|119042417 hsa-miR-151-5p 0 0 1
chr10:119042305|119042417 hsa-miR-1255b 0 0 1
chr10:119042305|119042417 hsa-miR-608 1 0 0
chr10:119042305|119042417 hsa-miR-611 1 0 0
chr10:119042305|119042417 hsa-miR-637 1 0 0
chr10:119042305|119042417 hsa-miR-663a 1 0 0
chr10:119042305|119042417 hsa-miR-1286 1 0 0
chr10:119042305|119042417 hsa-miR-1268a 1 0 0
chr10:119042305|119042417 hsa-miR-1538 1 0 0
chr10:119042305|119042417 hsa-miR-2861 1 0 0
chr10:119042305|119042417 hsa-miR-1193 1 0 0
chr10:119042305|119042417 hsa-miR-3197 1 0 0
chr10:119042305|119042417 hsa-miR-4257 1 0 0
chr10:119042305|119042417 hsa-miR-3621 1 0 0
chr10:119042305|119042417 hsa-miR-3911 1 0 0
chr10:119042305|119042417 hsa-miR-1268b 1 0 0
chr10:119042305|119042417 hsa-miR-4463 1 0 0
chr10:119042305|119042417 hsa-miR-4478 1 0 0
chr10:119042305|119042417 hsa-miR-4486 1 0 0
chr10:119042305|119042417 hsa-miR-4488 1 0 0
chr10:119042305|119042417 hsa-miR-4502 0 1 0
chr10:119042305|119042417 hsa-miR-4506 1 0 0
chr10:119042305|119042417 hsa-miR-4507 1 0 0
chr10:119042305|119042417 hsa-miR-4508 1 0 0
chr10:119042305|119042417 hsa-miR-4523 1 0 0
chr10:119042305|119042417 hsa-miR-1587 1 0 0
chr10:119042305|119042417 hsa-miR-4537 1 0 0
chr10:119042305|119042417 hsa-miR-4651 1 1 0
chr10:119042305|119042417 hsa-miR-4654 1 0 0
chr10:119042305|119042417 hsa-miR-4656 1 1 0
chr10:119042305|119042417 hsa-miR-4657 1 0 0
chr10:119042305|119042417 hsa-miR-4669 1 0 0
chr10:119042305|119042417 hsa-miR-4689 1 0 0
chr10:119042305|119042417 hsa-miR-4706 1 0 0
chr10:119042305|119042417 hsa-miR-4710 1 0 0
chr10:119042305|119042417 hsa-miR-4734 1 0 0
chr10:119042305|119042417 hsa-miR-4737 1 0 0
chr10:119042305|119042417 hsa-miR-4739 1 0 0
chr10:119042305|119042417 hsa-miR-4759 1 0 0
chr10:119042305|119042417 hsa-miR-5572 1 0 0
chr10:119042305|119042417 hsa-miR-5708 0 1 0
chr10:119042305|119042417 hsa-miR-6085 1 0 0
chr10:119042305|119042417 hsa-miR-6863 1 1 0
chr10:119042305|119042417 hsa-miR-7150 1 0 0
chr10:119042305|119042417 hsa-miR-7704 1 0 0
chr10:119042305|119042417 hsa-miR-8072 1 0 0
chr10:119042305|119042417 hsa-miR-8075 0 1 0
chr10:119042305|119042417 hsa-miR-8089 1 0 0
chr10:119042305|119042417 hsa-miR-4433b-3p 1 0 0
chr10:119042305|119042417 hsa-miR-128-1-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6734-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6765-5p 1 0 0
chr10:119042305|119042417 hsa-miR-7106-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6825-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6894-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6728-5p 1 1 0
chr10:119042305|119042417 hsa-miR-3663-3p 1 0 0
chr10:119042305|119042417 hsa-miR-6089 1 1 0
chr10:119042305|119042417 hsa-miR-6757-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6880-5p 1 0 0
chr10:119042305|119042417 hsa-miR-7847-3p 1 0 0
chr10:119042305|119042417 hsa-miR-4695-5p 0 1 0
chr10:119042305|119042417 hsa-miR-6744-5p 1 0 0
chr10:119042305|119042417 hsa-miR-7154-3p 1 1 0
chr10:119042305|119042417 hsa-miR-7160-5p 1 0 0
chr10:119042305|119042417 hsa-miR-3622b-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6721-5p 1 0 0
chr10:119042305|119042417 hsa-miR-4655-5p 1 1 0
chr10:119042305|119042417 hsa-miR-8069 1 0 0
chr10:119042305|119042417 hsa-miR-6742-5p 1 0 0
chr10:119042305|119042417 hsa-miR-3180-3p 1 0 0
chr10:119042305|119042417 hsa-miR-185-3p 1 0 0
chr10:119042305|119042417 hsa-miR-2467-3p 1 0 0
chr10:119042305|119042417 hsa-miR-6782-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6853-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6784-5p 1 0 0
chr10:119042305|119042417 hsa-miR-4640-5p 1 0 0
chr10:119042305|119042417 hsa-miR-1908-5p 1 0 0
chr10:119042305|119042417 hsa-miR-1228-5p 1 0 0
chr10:119042305|119042417 hsa-miR-887-3p 1 0 0
chr10:119042305|119042417 hsa-miR-6847-5p 1 1 0
chr10:119042305|119042417 hsa-miR-299-3p 1 0 0
chr10:119042305|119042417 hsa-miR-4787-5p 1 0 0
chr10:119042305|119042417 hsa-miR-149-3p 1 0 0
chr10:119042305|119042417 hsa-miR-6781-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6877-5p 1 1 0
chr10:119042305|119042417 hsa-miR-664b-5p 1 0 0
chr10:119042305|119042417 hsa-miR-1207-5p 1 0 0
chr10:119042305|119042417 hsa-miR-1233-5p 1 0 0
chr10:119042305|119042417 hsa-miR-4763-3p 1 0 0
chr10:119042305|119042417 hsa-miR-6778-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6787-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6812-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6816-5p 1 0 0
chr10:119042305|119042417 hsa-miR-3180 1 0 0
chr10:119042305|119042417 hsa-miR-5001-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6726-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6737-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6813-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6819-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6851-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6779-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6780a-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6808-5p 1 0 0
chr10:119042305|119042417 hsa-miR-3620-5p 1 0 0
chr10:119042305|119042417 hsa-miR-10396b-5p 1 0 0
chr10:119042305|119042417 hsa-miR-1237-5p 1 0 0
chr10:119042305|119042417 hsa-miR-1909-3p 1 0 0
chr10:119042305|119042417 hsa-miR-4649-5p 1 0 0
chr10:119042305|119042417 hsa-miR-4745-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6729-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6846-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6848-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6858-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6845-5p 1 0 0
chr10:119042305|119042417 hsa-miR-4758-5p 1 0 0
chr10:119042305|119042417 hsa-miR-4769-5p 1 1 0
chr10:119042305|119042417 hsa-miR-4665-5p 1 0 0
chr10:119042305|119042417 hsa-miR-6762-5p 1 0 0
chr10:119042305|119042417 hsa-miR-769-3p 1 0 0
chr10:119042305|119042417 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:119042305|119042417
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MGPRSSSALRQDDRSSSAPPRLGPRSSSIPRLGPL
Nucleotide Sequence CTGGGACCCCGGTCATCATCAGCATTACGCCAGGATGATCGCTCATCATCAGCGCCTCCTCGCCTCGGCCCCCGGTCATCATCCATCCCACGTCTTGGTCCTCTG
CircID chr10:119042305|119042417
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MDDDRGPRRGGADDERSSWRNADDDRGPRR
Nucleotide Sequence ATGGATGATGACCGGGGGCCGAGGCGAGGAGGCGCTGATGATGAGCGATCATCCTGGCGTAATGCTGATGATGACCGGGGTCCCAGGCGA
CircID chr10:119042305|119042417
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MMTGGRGEEALMMSDHPGVMLMMTGVPGE
Nucleotide Sequence ATGATGACCGGGGGCCGAGGCGAGGAGGCGCTGATGATGAGCGATCATCCTGGCGTAATGCTGATGATGACCGGGGTCCCAGGCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab