CircRNA Information

General Information
circRNA Basic Information
CircID chr10:130178625|130178830
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TCAGGAGGCTGAGACAGGGAGAATCTCCTGAACCCGGGAGGTGGAGATTGTAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCTAGAGCGAGACTCCATCTCATTCATTCATTCATAAATAAATAAATGAAGTTAAGGTATCCTAAAACCAACAGATTGTTTAGTATTAGGAAACGCAGCAACTGGAGCCAATGAAGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:130178625|130178830 hsa-miR-183-5p 0 0 1
chr10:130178625|130178830 hsa-miR-183-3p 0 0 1
chr10:130178625|130178830 hsa-miR-200b-5p 0 0 1
chr10:130178625|130178830 hsa-miR-200b-3p 0 0 1
chr10:130178625|130178830 hsa-miR-122-5p 0 0 1
chr10:130178625|130178830 hsa-miR-122-3p 0 0 1
chr10:130178625|130178830 hsa-miR-130a-5p 0 0 1
chr10:130178625|130178830 hsa-miR-130a-3p 0 0 1
chr10:130178625|130178830 hsa-miR-143-5p 0 0 1
chr10:130178625|130178830 hsa-miR-143-3p 0 0 1
chr10:130178625|130178830 hsa-miR-200c-5p 0 0 1
chr10:130178625|130178830 hsa-miR-200c-3p 0 0 1
chr10:130178625|130178830 hsa-miR-301a-5p 0 0 1
chr10:130178625|130178830 hsa-miR-301a-3p 0 0 1
chr10:130178625|130178830 hsa-miR-130b-5p 0 0 1
chr10:130178625|130178830 hsa-miR-130b-3p 0 0 1
chr10:130178625|130178830 hsa-miR-384 0 0 1
chr10:130178625|130178830 hsa-miR-429 0 0 1
chr10:130178625|130178830 hsa-miR-564 0 0 1
chr10:130178625|130178830 hsa-miR-579-5p 0 0 1
chr10:130178625|130178830 hsa-miR-579-3p 0 0 1
chr10:130178625|130178830 hsa-miR-651-5p 0 0 1
chr10:130178625|130178830 hsa-miR-651-3p 0 0 1
chr10:130178625|130178830 hsa-miR-454-5p 0 0 1
chr10:130178625|130178830 hsa-miR-454-3p 0 0 1
chr10:130178625|130178830 hsa-miR-301b-5p 0 0 1
chr10:130178625|130178830 hsa-miR-301b-3p 0 0 1
chr10:130178625|130178830 hsa-miR-1251-5p 0 0 1
chr10:130178625|130178830 hsa-miR-1251-3p 0 0 1
chr10:130178625|130178830 hsa-miR-1267 0 0 1
chr10:130178625|130178830 hsa-miR-145-5p 0 0 1
chr10:130178625|130178830 hsa-miR-339-5p 0 0 1
chr10:130178625|130178830 hsa-miR-1289 0 0 1
chr10:130178625|130178830 hsa-miR-1274a 0 0 1
chr10:130178625|130178830 hsa-miR-1274b 0 0 1
chr10:130178625|130178830 hsa-miR-720 0 0 1
chr10:130178625|130178830 hsa-miR-24 0 0 1
chr10:130178625|130178830 hsa-miR-4634 1 0 0
chr10:130178625|130178830 hsa-miR-6873-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:130178625|130178830
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MNPGGGDCSEPRSCHCTPAWARARLHLIHSFINK
Nucleotide Sequence CTGAACCCGGGAGGTGGAGATTGTAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCTAGAGCGAGACTCCATCTCATTCATTCATTCATAAATAAATAA
CircID chr10:130178625|130178830
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MLRFLILNNLLVLGYLNFIYLFMNE
Nucleotide Sequence TTGCTGCGTTTCCTAATACTAAACAATCTGTTGGTTTTAGGATACCTTAACTTCATTTATTTATTTATGAATGAATGA
CircID chr10:130178625|130178830
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MRWSLALAQAGVQWHDLGSLQSPPPGFRRFSLSQPP
Nucleotide Sequence ATGAGATGGAGTCTCGCTCTAGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTACAATCTCCACCTCCCGGGTTCAGGAGATTCTCCCTGTCTCAGCCTCCT
CircID chr10:130178625|130178830
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MECNGTILAHYNLHLPGSGDSPCLSLL
Nucleotide Sequence CTGGAGTGCAATGGCACGATCTTGGCTCACTACAATCTCCACCTCCCGGGTTCAGGAGATTCTCCCTGTCTCAGCCTCCTG
CircID chr10:130178625|130178830
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MNEMESRSSPGWSAMARSWLTTISTSRVQEILPVSAS
Nucleotide Sequence ATGAATGAGATGGAGTCTCGCTCTAGCCCAGGCTGGAGTGCAATGGCACGATCTTGGCTCACTACAATCTCCACCTCCCGGGTTCAGGAGATTCTCCCTGTCTCAGCCTCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab