CircRNA Information

General Information
circRNA Basic Information
CircID chr10:13127749|13127903
Strand +
CircType exon
Host Gene ENSG00000123240.15;
Algorism CIRI2;
Sequence CTGAGCCCTGAGGATGGTCATGGTTTCCAGGTCCTCTTCCTGCTTGGCAATGGTTTGCTTCATTTCATCCATTTGCAGCTGTTTGGAAGCCAGAGCCTTCTCTGCCAGTTCCAGTTTTTCACTCAGTTCCTTCAGCACTGCCCTGTCCACTTTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:13127749|13127903 hsa-miR-34a-5p 0 0 1
chr10:13127749|13127903 hsa-miR-34a-3p 0 0 1
chr10:13127749|13127903 hsa-miR-149-5p 0 0 1
chr10:13127749|13127903 hsa-miR-149-3p 0 0 1
chr10:13127749|13127903 hsa-miR-449a 1 0 1
chr10:13127749|13127903 hsa-miR-492 0 1 1
chr10:13127749|13127903 hsa-miR-591 0 0 1
chr10:13127749|13127903 hsa-miR-619-5p 0 0 1
chr10:13127749|13127903 hsa-miR-619-3p 0 0 1
chr10:13127749|13127903 hsa-miR-631 0 1 1
chr10:13127749|13127903 hsa-miR-449b-5p 0 0 1
chr10:13127749|13127903 hsa-miR-449b-3p 0 0 1
chr10:13127749|13127903 hsa-miR-760 0 0 1
chr10:13127749|13127903 hsa-miR-548e-5p 0 0 1
chr10:13127749|13127903 hsa-miR-548e-3p 0 0 1
chr10:13127749|13127903 hsa-miR-1255a 0 0 1
chr10:13127749|13127903 hsa-miR-1266-5p 0 0 1
chr10:13127749|13127903 hsa-miR-1266-3p 0 0 1
chr10:13127749|13127903 hsa-miR-1252-5p 0 0 1
chr10:13127749|13127903 hsa-miR-1252-3p 0 0 1
chr10:13127749|13127903 hsa-miR-512-3p 1 1 1
chr10:13127749|13127903 hsa-miR-875-3p 0 1 1
chr10:13127749|13127903 hsa-miR-34c-5p 1 1 1
chr10:13127749|13127903 hsa-miR-548a-3p 0 0 1
chr10:13127749|13127903 hsa-miR-1255b 0 0 1
chr10:13127749|13127903 hsa-miR-548f 0 0 1
chr10:13127749|13127903 hsa-miR-24 0 0 1
chr10:13127749|13127903 hsa-miR-203 0 0 1
chr10:13127749|13127903 hsa-miR-612 1 0 0
chr10:13127749|13127903 hsa-miR-648 1 0 0
chr10:13127749|13127903 hsa-miR-762 1 0 0
chr10:13127749|13127903 hsa-miR-2861 1 0 0
chr10:13127749|13127903 hsa-miR-3132 1 0 0
chr10:13127749|13127903 hsa-miR-3138 1 1 0
chr10:13127749|13127903 hsa-miR-3141 1 0 0
chr10:13127749|13127903 hsa-miR-4298 1 0 0
chr10:13127749|13127903 hsa-miR-4317 0 1 0
chr10:13127749|13127903 hsa-miR-3652 1 0 0
chr10:13127749|13127903 hsa-miR-3661 0 1 0
chr10:13127749|13127903 hsa-miR-4430 1 0 0
chr10:13127749|13127903 hsa-miR-4506 0 1 0
chr10:13127749|13127903 hsa-miR-1587 1 0 0
chr10:13127749|13127903 hsa-miR-4673 0 1 0
chr10:13127749|13127903 hsa-miR-4688 1 0 0
chr10:13127749|13127903 hsa-miR-5090 1 0 0
chr10:13127749|13127903 hsa-miR-5093 1 0 0
chr10:13127749|13127903 hsa-miR-5698 1 0 0
chr10:13127749|13127903 hsa-miR-6132 1 0 0
chr10:13127749|13127903 hsa-miR-6860 1 0 0
chr10:13127749|13127903 hsa-miR-6863 1 0 0
chr10:13127749|13127903 hsa-miR-8052 1 0 0
chr10:13127749|13127903 hsa-miR-8059 0 1 0
chr10:13127749|13127903 hsa-miR-8060 1 0 0
chr10:13127749|13127903 hsa-miR-8077 1 0 0
chr10:13127749|13127903 hsa-miR-12115 1 0 0
chr10:13127749|13127903 hsa-miR-12117 0 1 0
chr10:13127749|13127903 hsa-miR-12119 1 0 0
chr10:13127749|13127903 hsa-miR-12120 1 0 0
chr10:13127749|13127903 hsa-miR-143-3p 0 1 0
chr10:13127749|13127903 hsa-miR-6799-5p 1 0 0
chr10:13127749|13127903 hsa-miR-766-5p 1 0 0
chr10:13127749|13127903 hsa-miR-7847-3p 1 0 0
chr10:13127749|13127903 hsa-miR-6727-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6721-5p 1 0 0
chr10:13127749|13127903 hsa-miR-197-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6770-5p 0 1 0
chr10:13127749|13127903 hsa-miR-6874-5p 1 0 0
chr10:13127749|13127903 hsa-miR-5006-5p 0 1 0
chr10:13127749|13127903 hsa-miR-5088-5p 0 1 0
chr10:13127749|13127903 hsa-miR-4738-3p 1 0 0
chr10:13127749|13127903 hsa-miR-92b-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6824-5p 1 0 0
chr10:13127749|13127903 hsa-miR-4684-3p 0 1 0
chr10:13127749|13127903 hsa-miR-7112-5p 1 0 0
chr10:13127749|13127903 hsa-miR-2115-5p 0 1 0
chr10:13127749|13127903 hsa-miR-5004-5p 1 0 0
chr10:13127749|13127903 hsa-miR-1207-5p 1 1 0
chr10:13127749|13127903 hsa-miR-4763-3p 1 1 0
chr10:13127749|13127903 hsa-miR-6865-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6775-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6743-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6879-5p 1 1 0
chr10:13127749|13127903 hsa-miR-3620-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6836-5p 1 0 0
chr10:13127749|13127903 hsa-miR-10396b-5p 1 0 0
chr10:13127749|13127903 hsa-miR-449c-5p 1 0 0
chr10:13127749|13127903 hsa-miR-4632-5p 1 1 0
chr10:13127749|13127903 hsa-miR-6735-5p 1 1 0
chr10:13127749|13127903 hsa-miR-3187-5p 1 0 0
chr10:13127749|13127903 hsa-miR-4436b-3p 1 1 0
chr10:13127749|13127903 hsa-miR-4758-5p 1 0 0
chr10:13127749|13127903 hsa-miR-378a-3p 1 0 0
chr10:13127749|13127903 hsa-miR-6790-5p 1 0 0
chr10:13127749|13127903 hsa-miR-6849-5p 1 1 0
chr10:13127749|13127903 hsa-miR-320a-3p 1 0 0
chr10:13127749|13127903 hsa-miR-320b 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr10:13127749|13127903
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence LSPEDGHGFQVLFLLGNGLLHFIHLQLFGSQSLLCQFQFFTQFLQHCPVHF
Nucleotide Sequence CTGAGCCCTGAGGATGGTCATGGTTTCCAGGTCCTCTTCCTGCTTGGCAATGGTTTGCTTCATTTCATCCATTTGCAGCTGTTTGGAAGCCAGAGCCTTCTCTGCCAGTTCCAGTTTTTCACTCAGTTCCTTCAGCACTGCCCTGTCCACTTT
CircID chr10:13127749|13127903
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MRMVMVSRSSSCLAMVCFISSICSCLEARAFSASSSFSLSSFSTALSTF
Nucleotide Sequence CTGAGGATGGTCATGGTTTCCAGGTCCTCTTCCTGCTTGGCAATGGTTTGCTTCATTTCATCCATTTGCAGCTGTTTGGAAGCCAGAGCCTTCTCTGCCAGTTCCAGTTTTTCACTCAGTTCCTTCAGCACTGCCCTGTCCACTTTT
CircID chr10:13127749|13127903
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MKELSEKLELAEKALASKQLQMDEMKQTIAKQEEDLETMTILRAQ
Nucleotide Sequence CTGAAGGAACTGAGTGAAAAACTGGAACTGGCAGAGAAGGCTCTGGCTTCCAAACAGCTGCAAATGGATGAAATGAAGCAAACCATTGCCAAGCAGGAAGAGGACCTGGAAACCATGACCATCCTCAGGGCTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab