CircRNA Information

General Information
circRNA Basic Information
CircID chr10:13206948|13207174
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AAAGCCTAATATATTCACCACTGACATTTTACAGGCAATGTGTGCTGCCTTCTGTTCTAGATCAAGAACTAGCCAAGCATGGTGGCTCAGGCCTGCAATCCCAGCACTTTGGGCAGCTGAGCCCACTTGAGCCCAGGAGTTTGAAACCAGCCTGGACAACATAGTGAGACCTTGTCTCTATAAAAAAAAGTAAATTAAAAAAATTAGCTGGGTGTAGTGGTGCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:13206948|13207174 hsa-miR-17-5p 0 0 1
chr10:13206948|13207174 hsa-miR-17-3p 0 0 1
chr10:13206948|13207174 hsa-miR-20a-5p 0 0 1
chr10:13206948|13207174 hsa-miR-20a-3p 0 0 1
chr10:13206948|13207174 hsa-miR-22-5p 0 0 1
chr10:13206948|13207174 hsa-miR-22-3p 0 0 1
chr10:13206948|13207174 hsa-miR-93-5p 0 0 1
chr10:13206948|13207174 hsa-miR-93-3p 0 0 1
chr10:13206948|13207174 hsa-miR-106a-5p 0 0 1
chr10:13206948|13207174 hsa-miR-106a-3p 0 0 1
chr10:13206948|13207174 hsa-miR-198 0 0 1
chr10:13206948|13207174 hsa-miR-223-5p 0 0 1
chr10:13206948|13207174 hsa-miR-223-3p 0 0 1
chr10:13206948|13207174 hsa-miR-106b-5p 0 0 1
chr10:13206948|13207174 hsa-miR-106b-3p 0 0 1
chr10:13206948|13207174 hsa-miR-302a-5p 0 0 1
chr10:13206948|13207174 hsa-miR-302a-3p 0 0 1
chr10:13206948|13207174 hsa-miR-302b-5p 0 0 1
chr10:13206948|13207174 hsa-miR-302b-3p 0 0 1
chr10:13206948|13207174 hsa-miR-302c-5p 0 0 1
chr10:13206948|13207174 hsa-miR-302c-3p 0 0 1
chr10:13206948|13207174 hsa-miR-302d-5p 0 0 1
chr10:13206948|13207174 hsa-miR-302d-3p 0 0 1
chr10:13206948|13207174 hsa-miR-372-5p 0 0 1
chr10:13206948|13207174 hsa-miR-372-3p 0 0 1
chr10:13206948|13207174 hsa-miR-373-5p 0 0 1
chr10:13206948|13207174 hsa-miR-373-3p 0 0 1
chr10:13206948|13207174 hsa-miR-20b-5p 0 0 1
chr10:13206948|13207174 hsa-miR-20b-3p 0 0 1
chr10:13206948|13207174 hsa-miR-520e-5p 0 0 1
chr10:13206948|13207174 hsa-miR-520e-3p 0 0 1
chr10:13206948|13207174 hsa-miR-526b-5p 0 0 1
chr10:13206948|13207174 hsa-miR-526b-3p 0 0 1
chr10:13206948|13207174 hsa-miR-520b-5p 0 0 1
chr10:13206948|13207174 hsa-miR-520b-3p 0 0 1
chr10:13206948|13207174 hsa-miR-519d-5p 0 0 1
chr10:13206948|13207174 hsa-miR-519d-3p 0 0 1
chr10:13206948|13207174 hsa-miR-520g-5p 0 0 1
chr10:13206948|13207174 hsa-miR-520g-3p 0 0 1
chr10:13206948|13207174 hsa-miR-520h 0 0 1
chr10:13206948|13207174 hsa-miR-607 0 0 1
chr10:13206948|13207174 hsa-miR-624-5p 0 0 1
chr10:13206948|13207174 hsa-miR-624-3p 0 0 1
chr10:13206948|13207174 hsa-miR-656-5p 0 0 1
chr10:13206948|13207174 hsa-miR-656-3p 0 0 1
chr10:13206948|13207174 hsa-miR-302e 0 0 1
chr10:13206948|13207174 hsa-miR-512-3p 0 1 1
chr10:13206948|13207174 hsa-miR-767-5p 0 0 1
chr10:13206948|13207174 hsa-miR-1207-3p 0 0 1
chr10:13206948|13207174 hsa-miR-520d-3p 0 0 1
chr10:13206948|13207174 hsa-miR-520a-3p 0 0 1
chr10:13206948|13207174 hsa-miR-520c-3p 0 0 1
chr10:13206948|13207174 hsa-miR-590-3p 0 0 1
chr10:13206948|13207174 hsa-miR-24 0 0 1
chr10:13206948|13207174 hsa-miR-638 1 0 0
chr10:13206948|13207174 hsa-miR-645 1 0 0
chr10:13206948|13207174 hsa-miR-762 1 0 0
chr10:13206948|13207174 hsa-miR-1303 1 1 0
chr10:13206948|13207174 hsa-miR-4322 1 0 0
chr10:13206948|13207174 hsa-miR-4265 1 1 0
chr10:13206948|13207174 hsa-miR-3714 0 1 0
chr10:13206948|13207174 hsa-miR-4437 0 1 0
chr10:13206948|13207174 hsa-miR-4674 0 1 0
chr10:13206948|13207174 hsa-miR-8078 1 0 0
chr10:13206948|13207174 hsa-miR-29b-1-5p 0 1 0
chr10:13206948|13207174 hsa-miR-27a-5p 1 1 0
chr10:13206948|13207174 hsa-miR-29b-2-5p 0 1 0
chr10:13206948|13207174 hsa-miR-3663-3p 1 0 0
chr10:13206948|13207174 hsa-miR-6842-3p 1 0 0
chr10:13206948|13207174 hsa-miR-6787-3p 0 1 0
chr10:13206948|13207174 hsa-miR-3934-3p 0 1 0
chr10:13206948|13207174 hsa-miR-4732-5p 1 0 0
chr10:13206948|13207174 hsa-miR-1285-5p 1 1 0
chr10:13206948|13207174 hsa-miR-493-3p 1 0 0
chr10:13206948|13207174 hsa-miR-5001-5p 1 0 0
chr10:13206948|13207174 hsa-miR-3620-5p 1 0 0
chr10:13206948|13207174 hsa-miR-7151-3p 1 0 0
chr10:13206948|13207174 hsa-miR-324-3p 1 0 0
chr10:13206948|13207174 hsa-miR-10400-3p 0 1 0
chr10:13206948|13207174 hsa-miR-6783-3p 0 1 0
chr10:13206948|13207174 hsa-miR-619-5p 1 1 0
chr10:13206948|13207174 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:13206948|13207174
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MCAAFCSRSRTSQAWWLRPAIPALWAAEPT
Nucleotide Sequence ATGTGTGCTGCCTTCTGTTCTAGATCAAGAACTAGCCAAGCATGGTGGCTCAGGCCTGCAATCCCAGCACTTTGGGCAGCTGAGCCCACTTGA
CircID chr10:13206948|13207174
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MTFYRQCVLPSVLDQELAKHGGSGLQSQHFGQLSPLEPRSLKPAWTT
Nucleotide Sequence CTGACATTTTACAGGCAATGTGTGCTGCCTTCTGTTCTAGATCAAGAACTAGCCAAGCATGGTGGCTCAGGCCTGCAATCCCAGCACTTTGGGCAGCTGAGCCCACTTGAGCCCAGGAGTTTGAAACCAGCCTGGACAACATAG
CircID chr10:13206948|13207174
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MLSRLVSNSWAQVGSAAQSAGIAGLSHHAWLVLDLEQKAAHIACKMSVVNILGF
Nucleotide Sequence ATGTTGTCCAGGCTGGTTTCAAACTCCTGGGCTCAAGTGGGCTCAGCTGCCCAAAGTGCTGGGATTGCAGGCCTGAGCCACCATGCTTGGCTAGTTCTTGATCTAGAACAGAAGGCAGCACACATTGCCTGTAAAATGTCAGTGGTGAATATATTAGGCTTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab