CircRNA Information

General Information
circRNA Basic Information
CircID chr10:13444125|13444438
Strand -
CircType exon
Host Gene ENSG00000165626.15;
Algorism CIRI2;
Sequence CCTCTCCACACATCTGTGCTATAGCATTTATGTAATTCCTTCTGCCTCTCACACTAGTCTGAGGGCATTTGTACACCAGCACCCAACACGGGGCTGATTCTTGGTAGTTGCTCAAAAAGGCTTAGTGAATAGGGTTAAGGGAAACTAAAATAGATGCACTACAGAAGGTGAATCCATTTCTGCTAAAGCCTGATGAACAGAAGGTTGCTTAAATGTAATGCATCCAAACAAATGTCATTTGACCTGCCTGTAACCCTACCCTAGTCACTTCTGGTTCATAGAAACACTTAAGCATTTACATCCCTTTCCCTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:13444125|13444438 hsa-miR-204-5p 0 0 1
chr10:13444125|13444438 hsa-miR-204-3p 0 0 1
chr10:13444125|13444438 hsa-miR-211-5p 0 0 1
chr10:13444125|13444438 hsa-miR-211-3p 0 0 1
chr10:13444125|13444438 hsa-miR-130a-5p 0 0 1
chr10:13444125|13444438 hsa-miR-130a-3p 0 0 1
chr10:13444125|13444438 hsa-miR-185-5p 0 0 1
chr10:13444125|13444438 hsa-miR-185-3p 0 0 1
chr10:13444125|13444438 hsa-miR-301a-5p 0 0 1
chr10:13444125|13444438 hsa-miR-301a-3p 0 0 1
chr10:13444125|13444438 hsa-miR-130b-5p 0 0 1
chr10:13444125|13444438 hsa-miR-130b-3p 0 0 1
chr10:13444125|13444438 hsa-miR-484 0 0 1
chr10:13444125|13444438 hsa-miR-586 0 0 1
chr10:13444125|13444438 hsa-miR-595 0 0 1
chr10:13444125|13444438 hsa-miR-623 0 0 1
chr10:13444125|13444438 hsa-miR-648 0 0 1
chr10:13444125|13444438 hsa-miR-454-5p 0 0 1
chr10:13444125|13444438 hsa-miR-454-3p 0 0 1
chr10:13444125|13444438 hsa-miR-298 0 0 1
chr10:13444125|13444438 hsa-miR-301b-5p 0 0 1
chr10:13444125|13444438 hsa-miR-301b-3p 0 0 1
chr10:13444125|13444438 hsa-miR-940 0 0 1
chr10:13444125|13444438 hsa-miR-1237-5p 0 0 1
chr10:13444125|13444438 hsa-miR-1237-3p 0 0 1
chr10:13444125|13444438 hsa-miR-1206 0 0 1
chr10:13444125|13444438 hsa-miR-1246 0 0 1
chr10:13444125|13444438 hsa-miR-1262 0 0 1
chr10:13444125|13444438 hsa-miR-1252-5p 0 0 1
chr10:13444125|13444438 hsa-miR-1252-3p 0 0 1
chr10:13444125|13444438 hsa-miR-1827 0 0 1
chr10:13444125|13444438 hsa-miR-296-3p 1 0 1
chr10:13444125|13444438 hsa-miR-576-3p 0 0 1
chr10:13444125|13444438 hsa-miR-1207-5p 0 1 1
chr10:13444125|13444438 hsa-miR-142-3p 0 0 1
chr10:13444125|13444438 hsa-miR-105 0 0 1
chr10:13444125|13444438 hsa-miR-644 0 0 1
chr10:13444125|13444438 hsa-miR-138 0 0 1
chr10:13444125|13444438 hsa-miR-147 0 0 1
chr10:13444125|13444438 hsa-miR-365 0 0 1
chr10:13444125|13444438 hsa-miR-1264 0 1 0
chr10:13444125|13444438 hsa-miR-3141 1 0 0
chr10:13444125|13444438 hsa-miR-3153 0 1 0
chr10:13444125|13444438 hsa-miR-3182 0 1 0
chr10:13444125|13444438 hsa-miR-4463 1 0 0
chr10:13444125|13444438 hsa-miR-4706 1 0 0
chr10:13444125|13444438 hsa-miR-4736 0 1 0
chr10:13444125|13444438 hsa-miR-4780 0 1 0
chr10:13444125|13444438 hsa-miR-5696 0 1 0
chr10:13444125|13444438 hsa-miR-5787 1 0 0
chr10:13444125|13444438 hsa-miR-6132 1 0 0
chr10:13444125|13444438 hsa-miR-7978 0 1 0
chr10:13444125|13444438 hsa-miR-8085 1 0 0
chr10:13444125|13444438 hsa-miR-138-5p 0 1 0
chr10:13444125|13444438 hsa-miR-105-5p 0 1 0
chr10:13444125|13444438 hsa-miR-4433b-3p 1 0 0
chr10:13444125|13444438 hsa-miR-92a-2-5p 1 0 0
chr10:13444125|13444438 hsa-miR-4433a-3p 1 0 0
chr10:13444125|13444438 hsa-miR-1236-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6757-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6867-5p 0 1 0
chr10:13444125|13444438 hsa-miR-6890-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6741-5p 0 1 0
chr10:13444125|13444438 hsa-miR-6721-5p 1 0 0
chr10:13444125|13444438 hsa-miR-197-5p 1 0 0
chr10:13444125|13444438 hsa-miR-7845-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6716-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6796-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6868-3p 0 1 0
chr10:13444125|13444438 hsa-miR-6760-5p 1 1 0
chr10:13444125|13444438 hsa-miR-6881-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6786-5p 1 0 0
chr10:13444125|13444438 hsa-miR-1229-5p 1 1 0
chr10:13444125|13444438 hsa-let-7d-5p 0 1 0
chr10:13444125|13444438 hsa-miR-4756-3p 0 1 0
chr10:13444125|13444438 hsa-miR-4446-5p 0 1 0
chr10:13444125|13444438 hsa-miR-6824-5p 1 0 0
chr10:13444125|13444438 hsa-miR-5584-5p 1 1 0
chr10:13444125|13444438 hsa-miR-4776-5p 1 1 0
chr10:13444125|13444438 hsa-let-7f-5p 0 1 0
chr10:13444125|13444438 hsa-let-7e-5p 0 1 0
chr10:13444125|13444438 hsa-let-7a-5p 0 1 0
chr10:13444125|13444438 hsa-miR-3177-5p 0 1 0
chr10:13444125|13444438 hsa-miR-4704-5p 1 0 0
chr10:13444125|13444438 hsa-miR-1233-5p 1 0 0
chr10:13444125|13444438 hsa-miR-4763-3p 1 0 0
chr10:13444125|13444438 hsa-miR-6778-5p 1 1 0
chr10:13444125|13444438 hsa-miR-6743-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6756-5p 1 1 0
chr10:13444125|13444438 hsa-miR-6722-3p 1 0 0
chr10:13444125|13444438 hsa-miR-6797-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6808-5p 0 1 0
chr10:13444125|13444438 hsa-miR-6879-5p 1 0 0
chr10:13444125|13444438 hsa-miR-7111-5p 1 0 0
chr10:13444125|13444438 hsa-miR-4728-5p 1 0 0
chr10:13444125|13444438 hsa-miR-5196-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6780b-5p 1 0 0
chr10:13444125|13444438 hsa-miR-1909-3p 1 0 0
chr10:13444125|13444438 hsa-miR-449c-5p 1 0 0
chr10:13444125|13444438 hsa-miR-4649-5p 1 0 0
chr10:13444125|13444438 hsa-miR-4745-5p 1 0 0
chr10:13444125|13444438 hsa-miR-4749-5p 1 0 0
chr10:13444125|13444438 hsa-miR-6883-5p 1 0 0
chr10:13444125|13444438 hsa-miR-1910-3p 0 1 0
chr10:13444125|13444438 hsa-miR-6511a-5p 1 1 0
chr10:13444125|13444438 hsa-miR-6511b-5p 1 0 0
chr10:13444125|13444438 hsa-miR-30c-1-3p 1 0 0
chr10:13444125|13444438 hsa-miR-6855-5p 1 0 0
chr10:13444125|13444438 hsa-miR-7151-3p 0 1 0
chr10:13444125|13444438 hsa-miR-6766-5p 1 0 0
chr10:13444125|13444438 hsa-miR-302c-3p 0 1 0
chr10:13444125|13444438 hsa-miR-9851-5p 1 0 0
chr10:13444125|13444438 hsa-miR-664a-5p 1 0 0
chr10:13444125|13444438 hsa-miR-519c-3p 0 1 0
chr10:13444125|13444438 hsa-miR-4724-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:13444125|13444438
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MCYSIYVIPSASHTSLRAFVHQHPTRG
Nucleotide Sequence CTGTGCTATAGCATTTATGTAATTCCTTCTGCCTCTCACACTAGTCTGAGGGCATTTGTACACCAGCACCCAACACGGGGCTGA
CircID chr10:13444125|13444438
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MLKCFYEPEVTRVGLQAGQMTFVWMHYI
Nucleotide Sequence ATGCTTAAGTGTTTCTATGAACCAGAAGTGACTAGGGTAGGGTTACAGGCAGGTCAAATGACATTTGTTTGGATGCATTACATTTAA
CircID chr10:13444125|13444438
ORF Type ORF3
Protein Length 38
Nucleotide Length 114
Protein Sequence MSNYQESAPCWVLVYKCPQTSVRGRRNYINAIAQMCGE
Nucleotide Sequence TTGAGCAACTACCAAGAATCAGCCCCGTGTTGGGTGCTGGTGTACAAATGCCCTCAGACTAGTGTGAGAGGCAGAAGGAATTACATAAATGCTATAGCACAGATGTGTGGAGAG
CircID chr10:13444125|13444438
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MFGCITFKQPSVHQALAEMDSPSVVHLF
Nucleotide Sequence TTGTTTGGATGCATTACATTTAAGCAACCTTCTGTTCATCAGGCTTTAGCAGAAATGGATTCACCTTCTGTAGTGCATCTATTTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab