CircRNA Information

General Information
circRNA Basic Information
CircID chr10:16593293|16593461
Strand +
CircType exon
Host Gene ENSG00000148484.16;
Algorism CIRI2;
Sequence CACCGAAGAAGAATAATGACAAATCGAAAAAGATCAGCCGGAAACCCCTGGCAGCCAAGAACAGATAAGGAAGGGATTGGCATCGGCTGGCCTTCCAGCACCTTCTCTCTCCAACACTTCATTCTCTCTTGCCCTGTCTCTCAAATAAACCCAATGCTGCGTGTGAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:16593293|16593461 hsa-miR-18a-5p 0 0 1
chr10:16593293|16593461 hsa-miR-18a-3p 0 0 1
chr10:16593293|16593461 hsa-miR-31-5p 0 0 1
chr10:16593293|16593461 hsa-miR-31-3p 0 0 1
chr10:16593293|16593461 hsa-miR-107 1 0 1
chr10:16593293|16593461 hsa-miR-185-5p 0 0 1
chr10:16593293|16593461 hsa-miR-185-3p 0 0 1
chr10:16593293|16593461 hsa-miR-18b-5p 0 0 1
chr10:16593293|16593461 hsa-miR-18b-3p 0 0 1
chr10:16593293|16593461 hsa-miR-573 0 0 1
chr10:16593293|16593461 hsa-miR-604 0 0 1
chr10:16593293|16593461 hsa-miR-616-5p 0 0 1
chr10:16593293|16593461 hsa-miR-616-3p 0 0 1
chr10:16593293|16593461 hsa-miR-620 0 0 1
chr10:16593293|16593461 hsa-miR-629-5p 0 0 1
chr10:16593293|16593461 hsa-miR-629-3p 0 0 1
chr10:16593293|16593461 hsa-miR-647 0 0 1
chr10:16593293|16593461 hsa-miR-1180-5p 0 0 1
chr10:16593293|16593461 hsa-miR-1180-3p 0 0 1
chr10:16593293|16593461 hsa-miR-1287-5p 0 0 1
chr10:16593293|16593461 hsa-miR-1287-3p 0 0 1
chr10:16593293|16593461 hsa-miR-1270 0 0 1
chr10:16593293|16593461 hsa-miR-188-5p 0 0 1
chr10:16593293|16593461 hsa-miR-342-3p 0 0 1
chr10:16593293|16593461 hsa-miR-103 0 0 1
chr10:16593293|16593461 hsa-miR-623 1 0 0
chr10:16593293|16593461 hsa-miR-3132 1 0 0
chr10:16593293|16593461 hsa-miR-4306 0 1 0
chr10:16593293|16593461 hsa-miR-4259 1 0 0
chr10:16593293|16593461 hsa-miR-4507 1 0 0
chr10:16593293|16593461 hsa-miR-4644 0 1 0
chr10:16593293|16593461 hsa-miR-4672 1 0 0
chr10:16593293|16593461 hsa-miR-4739 0 1 0
chr10:16593293|16593461 hsa-miR-4741 1 0 0
chr10:16593293|16593461 hsa-miR-7150 1 0 0
chr10:16593293|16593461 hsa-miR-8060 1 0 0
chr10:16593293|16593461 hsa-miR-8085 1 0 0
chr10:16593293|16593461 hsa-miR-1236-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6089 1 0 0
chr10:16593293|16593461 hsa-miR-6746-5p 1 0 0
chr10:16593293|16593461 hsa-miR-4722-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6741-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6727-5p 1 0 0
chr10:16593293|16593461 hsa-miR-4677-5p 0 1 0
chr10:16593293|16593461 hsa-miR-197-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6760-5p 1 1 0
chr10:16593293|16593461 hsa-miR-296-3p 1 0 0
chr10:16593293|16593461 hsa-miR-103a-3p 1 0 0
chr10:16593293|16593461 hsa-miR-1250-5p 1 0 0
chr10:16593293|16593461 hsa-miR-2114-5p 0 1 0
chr10:16593293|16593461 hsa-miR-3186-3p 1 0 0
chr10:16593293|16593461 hsa-miR-1207-5p 1 0 0
chr10:16593293|16593461 hsa-miR-4763-3p 1 0 0
chr10:16593293|16593461 hsa-miR-6787-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6812-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6775-5p 1 1 0
chr10:16593293|16593461 hsa-miR-6851-5p 1 0 0
chr10:16593293|16593461 hsa-miR-1249-5p 1 1 0
chr10:16593293|16593461 hsa-miR-6797-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6875-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6879-5p 1 0 0
chr10:16593293|16593461 hsa-miR-4685-3p 1 0 0
chr10:16593293|16593461 hsa-miR-6866-3p 0 1 0
chr10:16593293|16593461 hsa-miR-5196-5p 1 0 0
chr10:16593293|16593461 hsa-miR-4726-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6729-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6858-5p 1 0 0
chr10:16593293|16593461 hsa-miR-4436b-3p 0 1 0
chr10:16593293|16593461 hsa-miR-3940-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6758-5p 1 0 0
chr10:16593293|16593461 hsa-miR-6856-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:16593293|16593461
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence MTNRKRSAGNPWQPRTDKEGIGIGWPSSTFSLQHFILSCPVSQINPMLRVR
Nucleotide Sequence ATGACAAATCGAAAAAGATCAGCCGGAAACCCCTGGCAGCCAAGAACAGATAAGGAAGGGATTGGCATCGGCTGGCCTTCCAGCACCTTCTCTCTCCAACACTTCATTCTCTCTTGCCCTGTCTCTCAAATAAACCCAATGCTGCGTGTGAGG
CircID chr10:16593293|16593461
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MAFQHLLSPTLHSLLPCLSNKPNAACE
Nucleotide Sequence CTGGCCTTCCAGCACCTTCTCTCTCCAACACTTCATTCTCTCTTGCCCTGTCTCTCAAATAAACCCAATGCTGCGTGTGAG
CircID chr10:16593293|16593461
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MRDRARENEVLEREGAGRPADANPFLICSWLPGVSG
Nucleotide Sequence TTGAGAGACAGGGCAAGAGAGAATGAAGTGTTGGAGAGAGAAGGTGCTGGAAGGCCAGCCGATGCCAATCCCTTCCTTATCTGTTCTTGGCTGCCAGGGGTTTCCGGCTGA
CircID chr10:16593293|16593461
ORF Type ORF4
Protein Length 40
Nucleotide Length 120
Protein Sequence MKCWREKVLEGQPMPIPSLSVLGCQGFPADLFRFVIILLR
Nucleotide Sequence ATGAAGTGTTGGAGAGAGAAGGTGCTGGAAGGCCAGCCGATGCCAATCCCTTCCTTATCTGTTCTTGGCTGCCAGGGGTTTCCGGCTGATCTTTTTCGATTTGTCATTATTCTTCTTCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab