CircRNA Information

General Information
circRNA Basic Information
CircID chr10:16817025|16817386
Strand -
CircType exon
Host Gene ENSG00000148484.16;
Algorism CIRI2;
Sequence CTCGGGCTGGTTCTTCTCCCGGCTCTCCTCCACCAACTTCTTCAGAGACTTGGACATGGTCTGCACCGAACAACAACAAAGCACGTGGGCGATGACAGCAAGCGCAGAGGCGGAAAGGCAAGAGGCCTTCGCTGCCACTCTGAGGCTTCCCCAGGGTTGGAGCGGGTGGGCGTCCGAGGGCGTCCCAGGGGCTGGTCCGGGTGCGGGGAGGGGATGGAGTGGGAAGGGTTCAGCCCCGCTGCGGCCACGCAGCGAGAAGCAACCCCAAGTGCAACACCGCACACACTCACCACGGAAGGTAGCCCCTAAGACGATGGGCGTGCAACCACAAGCTTCGGCAGAACGCACTCCAGCTGCCCTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:16817025|16817386 hsa-miR-122-5p 0 0 1
chr10:16817025|16817386 hsa-miR-122-3p 0 0 1
chr10:16817025|16817386 hsa-miR-375-5p 0 0 1
chr10:16817025|16817386 hsa-miR-375-3p 0 0 1
chr10:16817025|16817386 hsa-miR-591 0 0 1
chr10:16817025|16817386 hsa-miR-593-5p 0 0 1
chr10:16817025|16817386 hsa-miR-593-3p 0 0 1
chr10:16817025|16817386 hsa-miR-626 0 0 1
chr10:16817025|16817386 hsa-miR-639 0 1 1
chr10:16817025|16817386 hsa-miR-662 0 0 1
chr10:16817025|16817386 hsa-miR-765 0 1 1
chr10:16817025|16817386 hsa-miR-147b-5p 0 0 1
chr10:16817025|16817386 hsa-miR-147b-3p 0 0 1
chr10:16817025|16817386 hsa-miR-744-5p 0 0 1
chr10:16817025|16817386 hsa-miR-744-3p 0 0 1
chr10:16817025|16817386 hsa-miR-1204 0 0 1
chr10:16817025|16817386 hsa-miR-1250-5p 0 0 1
chr10:16817025|16817386 hsa-miR-1250-3p 0 0 1
chr10:16817025|16817386 hsa-miR-1253 0 1 1
chr10:16817025|16817386 hsa-miR-671-5p 0 1 1
chr10:16817025|16817386 hsa-miR-885-3p 0 0 1
chr10:16817025|16817386 hsa-miR-574-5p 0 1 1
chr10:16817025|16817386 hsa-miR-1207-3p 0 0 1
chr10:16817025|16817386 hsa-miR-331-3p 0 1 1
chr10:16817025|16817386 hsa-miR-188-3p 0 0 1
chr10:16817025|16817386 hsa-miR-548b-3p 0 0 1
chr10:16817025|16817386 hsa-miR-1260 0 0 1
chr10:16817025|16817386 hsa-miR-720 0 0 1
chr10:16817025|16817386 hsa-miR-636 1 1 0
chr10:16817025|16817386 hsa-miR-2110 0 1 0
chr10:16817025|16817386 hsa-miR-3185 0 1 0
chr10:16817025|16817386 hsa-miR-4292 1 1 0
chr10:16817025|16817386 hsa-miR-3135b 0 1 0
chr10:16817025|16817386 hsa-miR-4466 1 0 0
chr10:16817025|16817386 hsa-miR-4493 0 1 0
chr10:16817025|16817386 hsa-miR-4508 0 1 0
chr10:16817025|16817386 hsa-miR-4512 1 0 0
chr10:16817025|16817386 hsa-miR-4515 1 0 0
chr10:16817025|16817386 hsa-miR-4516 0 1 0
chr10:16817025|16817386 hsa-miR-4784 0 1 0
chr10:16817025|16817386 hsa-miR-9899 1 0 0
chr10:16817025|16817386 hsa-miR-12115 1 0 0
chr10:16817025|16817386 hsa-miR-6749-3p 1 1 0
chr10:16817025|16817386 hsa-miR-6879-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6894-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6720-5p 0 1 0
chr10:16817025|16817386 hsa-miR-6892-3p 1 0 0
chr10:16817025|16817386 hsa-miR-8071 1 0 0
chr10:16817025|16817386 hsa-miR-1225-3p 0 1 0
chr10:16817025|16817386 hsa-miR-6880-5p 1 1 0
chr10:16817025|16817386 hsa-miR-7847-3p 1 1 0
chr10:16817025|16817386 hsa-miR-6746-5p 0 1 0
chr10:16817025|16817386 hsa-miR-6727-5p 1 0 0
chr10:16817025|16817386 hsa-miR-191-3p 1 1 0
chr10:16817025|16817386 hsa-miR-7110-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6845-3p 1 0 0
chr10:16817025|16817386 hsa-miR-3180-3p 1 0 0
chr10:16817025|16817386 hsa-miR-185-3p 1 1 0
chr10:16817025|16817386 hsa-miR-6798-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6765-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6821-5p 0 1 0
chr10:16817025|16817386 hsa-miR-6858-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6884-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6786-5p 1 0 0
chr10:16817025|16817386 hsa-miR-1226-5p 0 1 0
chr10:16817025|16817386 hsa-miR-1247-5p 1 0 0
chr10:16817025|16817386 hsa-miR-1908-3p 1 0 0
chr10:16817025|16817386 hsa-miR-4783-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6830-3p 0 1 0
chr10:16817025|16817386 hsa-miR-6789-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6786-3p 0 1 0
chr10:16817025|16817386 hsa-miR-6878-5p 0 1 0
chr10:16817025|16817386 hsa-miR-6887-3p 1 0 0
chr10:16817025|16817386 hsa-miR-1224-3p 1 0 0
chr10:16817025|16817386 hsa-miR-4746-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6826-3p 0 1 0
chr10:16817025|16817386 hsa-miR-4649-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6777-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6767-3p 0 1 0
chr10:16817025|16817386 hsa-miR-6734-3p 0 1 0
chr10:16817025|16817386 hsa-miR-1249-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6729-3p 1 1 0
chr10:16817025|16817386 hsa-miR-7158-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6800-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6732-3p 1 1 0
chr10:16817025|16817386 hsa-miR-3162-3p 1 0 0
chr10:16817025|16817386 hsa-miR-3156-3p 1 1 0
chr10:16817025|16817386 hsa-miR-10400-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6769b-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6787-5p 1 0 0
chr10:16817025|16817386 hsa-miR-6756-5p 1 0 0
chr10:16817025|16817386 hsa-miR-11181-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6797-5p 1 0 0
chr10:16817025|16817386 hsa-miR-7111-5p 1 0 0
chr10:16817025|16817386 hsa-miR-4685-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6780b-5p 1 1 0
chr10:16817025|16817386 hsa-miR-10396a-5p 0 1 0
chr10:16817025|16817386 hsa-miR-4632-5p 1 1 0
chr10:16817025|16817386 hsa-miR-4685-5p 1 0 0
chr10:16817025|16817386 hsa-miR-4725-3p 0 1 0
chr10:16817025|16817386 hsa-miR-4723-5p 0 1 0
chr10:16817025|16817386 hsa-miR-6877-3p 0 1 0
chr10:16817025|16817386 hsa-miR-302d-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6791-5p 0 1 0
chr10:16817025|16817386 hsa-miR-6756-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6784-3p 1 0 0
chr10:16817025|16817386 hsa-miR-10401-3p 1 0 0
chr10:16817025|16817386 hsa-miR-10392-3p 1 0 0
chr10:16817025|16817386 hsa-miR-483-3p 1 0 0
chr10:16817025|16817386 hsa-miR-6751-3p 1 1 0
chr10:16817025|16817386 hsa-miR-6744-3p 0 1 0
chr10:16817025|16817386 hsa-miR-6781-3p 0 1 0
chr10:16817025|16817386 hsa-miR-5195-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:16817025|16817386
ORF Type ORF1
Protein Length 100
Nucleotide Length 303
Protein Sequence MVLLPALLHQLLQRLGHGLHRTTTKHVGDDSKRRGGKARGLRCHSEASPGLERVGVRGRPRGWSGCGEGMEWEGFSPAAATQREATPSATPHTLTTEGSP
Nucleotide Sequence CTGGTTCTTCTCCCGGCTCTCCTCCACCAACTTCTTCAGAGACTTGGACATGGTCTGCACCGAACAACAACAAAGCACGTGGGCGATGACAGCAAGCGCAGAGGCGGAAAGGCAAGAGGCCTTCGCTGCCACTCTGAGGCTTCCCCAGGGTTGGAGCGGGTGGGCGTCCGAGGGCGTCCCAGGGGCTGGTCCGGGTGCGGGGAGGGGATGGAGTGGGAAGGGTTCAGCCCCGCTGCGGCCACGCAGCGAGAAGCAACCCCAAGTGCAACACCGCACACACTCACCACGGAAGGTAGCCCCTAA
CircID chr10:16817025|16817386
ORF Type ORF2
Protein Length 104
Nucleotide Length 312
Protein Sequence MDMVCTEQQQSTWAMTASAEAERQEAFAATLRLPQGWSGWASEGVPGAGPGAGRGWSGKGSAPLRPRSEKQPQVQHRTHSPRKVAPKTMGVQPQASAERTPAAL
Nucleotide Sequence TTGGACATGGTCTGCACCGAACAACAACAAAGCACGTGGGCGATGACAGCAAGCGCAGAGGCGGAAAGGCAAGAGGCCTTCGCTGCCACTCTGAGGCTTCCCCAGGGTTGGAGCGGGTGGGCGTCCGAGGGCGTCCCAGGGGCTGGTCCGGGTGCGGGGAGGGGATGGAGTGGGAAGGGTTCAGCCCCGCTGCGGCCACGCAGCGAGAAGCAACCCCAAGTGCAACACCGCACACACTCACCACGGAAGGTAGCCCCTAAGACGATGGGCGTGCAACCACAAGCTTCGGCAGAACGCACTCCAGCTGCCCTC
CircID chr10:16817025|16817386
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MVRVRGGDGVGRVQPRCGHAARSNPKCNTAHTHHGR
Nucleotide Sequence CTGGTCCGGGTGCGGGGAGGGGATGGAGTGGGAAGGGTTCAGCCCCGCTGCGGCCACGCAGCGAGAAGCAACCCCAAGTGCAACACCGCACACACTCACCACGGAAGGTAG
CircID chr10:16817025|16817386
ORF Type ORF4
Protein Length 63
Nucleotide Length 192
Protein Sequence MNPSHSIPSPHPDQPLGRPRTPTRSNPGEASEWQRRPLAFPPLRLLSSPTCFVVVRCRPCPSL
Nucleotide Sequence CTGAACCCTTCCCACTCCATCCCCTCCCCGCACCCGGACCAGCCCCTGGGACGCCCTCGGACGCCCACCCGCTCCAACCCTGGGGAAGCCTCAGAGTGGCAGCGAAGGCCTCTTGCCTTTCCGCCTCTGCGCTTGCTGTCATCGCCCACGTGCTTTGTTGTTGTTCGGTGCAGACCATGTCCAAGTCTCTGA
CircID chr10:16817025|16817386
ORF Type ORF5
Protein Length 51
Nucleotide Length 153
Protein Sequence MGKPQSGSEGLLPFRLCACCHRPRALLLFGADHVQVSEEVGGGEPGEEPAR
Nucleotide Sequence CTGGGGAAGCCTCAGAGTGGCAGCGAAGGCCTCTTGCCTTTCCGCCTCTGCGCTTGCTGTCATCGCCCACGTGCTTTGTTGTTGTTCGGTGCAGACCATGTCCAAGTCTCTGAAGAAGTTGGTGGAGGAGAGCCGGGAGAAGAACCAGCCCGA
CircID chr10:16817025|16817386
ORF Type ORF6
Protein Length 84
Nucleotide Length 252
Protein Sequence MRGRSGAEPFPLHPLPAPGPAPGTPSDAHPLQPWGSLRVAAKASCLSASALAVIAHVLCCCSVQTMSKSLKKLVEESREKNQPE
Nucleotide Sequence CTGCGTGGCCGCAGCGGGGCTGAACCCTTCCCACTCCATCCCCTCCCCGCACCCGGACCAGCCCCTGGGACGCCCTCGGACGCCCACCCGCTCCAACCCTGGGGAAGCCTCAGAGTGGCAGCGAAGGCCTCTTGCCTTTCCGCCTCTGCGCTTGCTGTCATCGCCCACGTGCTTTGTTGTTGTTCGGTGCAGACCATGTCCAAGTCTCTGAAGAAGTTGGTGGAGGAGAGCCGGGAGAAGAACCAGCCCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab