CircRNA Information

General Information
circRNA Basic Information
CircID chr10:21759170|21759314
Strand -
CircType exon
Host Gene ENSG00000136770.9;
Algorism CIRI2;
Sequence CTTGCTCTTGGACGGGACACATCTGGCTATTTTGTCCCAGCGGTCAGAGGATCCCCTTGGGTACTGCTGCAACGCCAGTTCCAGAAGTTTCTGTTGATTTTGAGTCCACGGCTCCTCTGCAGACCGAGCTCTCTCTTTTCTCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:21759170|21759314 hsa-miR-107 0 0 1
chr10:21759170|21759314 hsa-miR-335-5p 0 0 1
chr10:21759170|21759314 hsa-miR-335-3p 0 0 1
chr10:21759170|21759314 hsa-miR-539-5p 0 0 1
chr10:21759170|21759314 hsa-miR-539-3p 0 0 1
chr10:21759170|21759314 hsa-miR-575 0 0 1
chr10:21759170|21759314 hsa-miR-421 0 1 1
chr10:21759170|21759314 hsa-miR-1301-5p 0 0 1
chr10:21759170|21759314 hsa-miR-1301-3p 0 0 1
chr10:21759170|21759314 hsa-miR-888-5p 0 0 1
chr10:21759170|21759314 hsa-miR-888-3p 0 0 1
chr10:21759170|21759314 hsa-miR-1205 0 0 1
chr10:21759170|21759314 hsa-miR-1299 0 1 1
chr10:21759170|21759314 hsa-miR-1247-5p 0 0 1
chr10:21759170|21759314 hsa-miR-1247-3p 0 0 1
chr10:21759170|21759314 hsa-miR-423-3p 1 1 1
chr10:21759170|21759314 hsa-miR-1184 0 0 1
chr10:21759170|21759314 hsa-miR-576-3p 0 0 1
chr10:21759170|21759314 hsa-miR-875-3p 0 0 1
chr10:21759170|21759314 hsa-miR-1302 0 0 1
chr10:21759170|21759314 hsa-miR-103 0 0 1
chr10:21759170|21759314 hsa-miR-516b 0 0 1
chr10:21759170|21759314 hsa-miR-422a 0 1 0
chr10:21759170|21759314 hsa-miR-3125 1 0 0
chr10:21759170|21759314 hsa-miR-378c 0 1 0
chr10:21759170|21759314 hsa-miR-4251 0 1 0
chr10:21759170|21759314 hsa-miR-4453 1 1 0
chr10:21759170|21759314 hsa-miR-3135b 1 0 0
chr10:21759170|21759314 hsa-miR-4527 0 1 0
chr10:21759170|21759314 hsa-miR-8063 0 1 0
chr10:21759170|21759314 hsa-miR-2467-3p 0 1 0
chr10:21759170|21759314 hsa-miR-5088-5p 1 0 0
chr10:21759170|21759314 hsa-miR-4713-3p 0 1 0
chr10:21759170|21759314 hsa-miR-6847-5p 0 1 0
chr10:21759170|21759314 hsa-miR-3158-5p 0 1 0
chr10:21759170|21759314 hsa-miR-6814-5p 0 1 0
chr10:21759170|21759314 hsa-miR-501-5p 0 1 0
chr10:21759170|21759314 hsa-miR-6726-5p 1 1 0
chr10:21759170|21759314 hsa-miR-1909-3p 1 0 0
chr10:21759170|21759314 hsa-miR-939-5p 1 0 0
chr10:21759170|21759314 hsa-miR-6856-5p 1 0 0
chr10:21759170|21759314 hsa-miR-4646-5p 1 0 0
chr10:21759170|21759314 hsa-miR-378a-3p 0 1 0
chr10:21759170|21759314 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:21759170|21759314
ORF Type ORF1
Protein Length 27
Nucleotide Length 81
Protein Sequence MLQRQFQKFLLILSPRLLCRPSSLFSQ
Nucleotide Sequence CTGCTGCAACGCCAGTTCCAGAAGTTTCTGTTGATTTTGAGTCCACGGCTCCTCTGCAGACCGAGCTCTCTCTTTTCTCAG
CircID chr10:21759170|21759314
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence LLLDGTHLAILSQRSEDPLGYCCNASSRSFC
Nucleotide Sequence TTGCTCTTGGACGGGACACATCTGGCTATTTTGTCCCAGCGGTCAGAGGATCCCCTTGGGTACTGCTGCAACGCCAGTTCCAGAAGTTTCTGTTGA
CircID chr10:21759170|21759314
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MGTAATPVPEVSVDFESTAPLQTELSLFS
Nucleotide Sequence TTGGGTACTGCTGCAACGCCAGTTCCAGAAGTTTCTGTTGATTTTGAGTCCACGGCTCCTCTGCAGACCGAGCTCTCTCTTTTCTCA
CircID chr10:21759170|21759314
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDRWDKIARCVPSKSK
Nucleotide Sequence CTGAGAAAAGAGAGAGCTCGGTCTGCAGAGGAGCCGTGGACTCAAAATCAACAGAAACTTCTGGAACTGGCGTTGCAGCAGTACCCAAGGGGATCCTCTGACCGCTGGGACAAAATAGCCAGATGTGTCCCGTCCAAGAGCAAG
CircID chr10:21759170|21759314
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MQRSRGLKINRNFWNWRCSSTQGDPLTAGTK
Nucleotide Sequence CTGCAGAGGAGCCGTGGACTCAAAATCAACAGAAACTTCTGGAACTGGCGTTGCAGCAGTACCCAAGGGGATCCTCTGACCGCTGGGACAAAATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab