CircRNA Information

General Information
circRNA Basic Information
CircID chr10:246439|246703
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence AAGCTAAGCTGATTGAATTGTGAACAATTGGGAGGCATTTGTGAATCCAGTTCTGAGAACTTTTGTCGACTGTGAAAGACAAAACAAATCTCATTTATTTTCCGCTTGGTAACAGTTTATTTATTCAAGCCATGACGAAGCCTAAGTGATTGTGGTTTTCGCAATTAAAAGTAACGGCAGAACCCACAATTGCTTTTGCACCAAGCTAACAGACGAGAACTGCCACAGGTCGCACTTTATGGCAGGCAGGGTCCACTGAAGCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:246439|246703 hsa-miR-17-5p 0 0 1
chr10:246439|246703 hsa-miR-17-3p 0 0 1
chr10:246439|246703 hsa-miR-19a-5p 0 0 1
chr10:246439|246703 hsa-miR-19a-3p 0 0 1
chr10:246439|246703 hsa-miR-20a-5p 0 0 1
chr10:246439|246703 hsa-miR-20a-3p 0 0 1
chr10:246439|246703 hsa-miR-27a-5p 0 0 1
chr10:246439|246703 hsa-miR-27a-3p 0 0 1
chr10:246439|246703 hsa-miR-93-5p 0 0 1
chr10:246439|246703 hsa-miR-93-3p 0 0 1
chr10:246439|246703 hsa-miR-106a-5p 0 0 1
chr10:246439|246703 hsa-miR-106a-3p 0 0 1
chr10:246439|246703 hsa-miR-34a-5p 0 0 1
chr10:246439|246703 hsa-miR-34a-3p 0 0 1
chr10:246439|246703 hsa-miR-27b-5p 0 0 1
chr10:246439|246703 hsa-miR-27b-3p 0 0 1
chr10:246439|246703 hsa-miR-150-5p 0 0 1
chr10:246439|246703 hsa-miR-150-3p 0 0 1
chr10:246439|246703 hsa-miR-106b-5p 0 0 1
chr10:246439|246703 hsa-miR-106b-3p 0 0 1
chr10:246439|246703 hsa-miR-34b-5p 0 0 1
chr10:246439|246703 hsa-miR-34b-3p 0 0 1
chr10:246439|246703 hsa-miR-135b-5p 0 0 1
chr10:246439|246703 hsa-miR-135b-3p 0 0 1
chr10:246439|246703 hsa-miR-20b-5p 0 0 1
chr10:246439|246703 hsa-miR-20b-3p 0 0 1
chr10:246439|246703 hsa-miR-449a 1 0 1
chr10:246439|246703 hsa-miR-511-5p 0 0 1
chr10:246439|246703 hsa-miR-511-3p 0 0 1
chr10:246439|246703 hsa-miR-519d-5p 0 0 1
chr10:246439|246703 hsa-miR-519d-3p 0 0 1
chr10:246439|246703 hsa-miR-504-5p 0 0 1
chr10:246439|246703 hsa-miR-504-3p 0 0 1
chr10:246439|246703 hsa-miR-449b-5p 0 0 1
chr10:246439|246703 hsa-miR-449b-3p 0 0 1
chr10:246439|246703 hsa-miR-1243 0 0 1
chr10:246439|246703 hsa-miR-548g-5p 0 0 1
chr10:246439|246703 hsa-miR-548g-3p 0 0 1
chr10:246439|246703 hsa-miR-302f 0 0 1
chr10:246439|246703 hsa-miR-513b-5p 0 0 1
chr10:246439|246703 hsa-miR-513b-3p 0 0 1
chr10:246439|246703 hsa-miR-142-5p 0 0 1
chr10:246439|246703 hsa-miR-513a-5p 0 0 1
chr10:246439|246703 hsa-miR-34c-5p 0 0 1
chr10:246439|246703 hsa-miR-105 0 0 1
chr10:246439|246703 hsa-miR-128 0 0 1
chr10:246439|246703 hsa-miR-135a 0 0 1
chr10:246439|246703 hsa-miR-19b 0 0 1
chr10:246439|246703 hsa-miR-768-3p 0 0 1
chr10:246439|246703 hsa-miR-298 0 1 0
chr10:246439|246703 hsa-miR-548n 0 1 0
chr10:246439|246703 hsa-miR-548q 0 1 0
chr10:246439|246703 hsa-miR-548w 0 1 0
chr10:246439|246703 hsa-miR-548z 0 1 0
chr10:246439|246703 hsa-miR-548ab 0 1 0
chr10:246439|246703 hsa-miR-548ac 0 1 0
chr10:246439|246703 hsa-miR-4453 0 1 0
chr10:246439|246703 hsa-miR-4515 1 0 0
chr10:246439|246703 hsa-miR-4522 1 0 0
chr10:246439|246703 hsa-miR-548an 0 1 0
chr10:246439|246703 hsa-miR-4705 0 1 0
chr10:246439|246703 hsa-miR-6793-5p 0 1 0
chr10:246439|246703 hsa-miR-4725-5p 0 1 0
chr10:246439|246703 hsa-miR-6735-3p 1 0 0
chr10:246439|246703 hsa-miR-146b-3p 1 0 0
chr10:246439|246703 hsa-miR-6752-3p 0 1 0
chr10:246439|246703 hsa-miR-18b-5p 0 1 0
chr10:246439|246703 hsa-miR-6817-5p 0 1 0
chr10:246439|246703 hsa-miR-7156-5p 0 1 0
chr10:246439|246703 hsa-miR-146b-5p 0 1 0
chr10:246439|246703 hsa-miR-548b-5p 0 1 0
chr10:246439|246703 hsa-miR-548d-5p 0 1 0
chr10:246439|246703 hsa-miR-548e-5p 0 1 0
chr10:246439|246703 hsa-miR-548az-5p 0 1 0
chr10:246439|246703 hsa-miR-548aa 0 1 0
chr10:246439|246703 hsa-miR-548t-3p 0 1 0
chr10:246439|246703 hsa-miR-548j-5p 0 1 0
chr10:246439|246703 hsa-miR-548as-5p 0 1 0
chr10:246439|246703 hsa-miR-548ag 0 1 0
chr10:246439|246703 hsa-miR-548aq-5p 0 1 0
chr10:246439|246703 hsa-miR-548bb-5p 0 1 0
chr10:246439|246703 hsa-miR-548az-3p 0 1 0
chr10:246439|246703 hsa-miR-548ay-3p 0 1 0
chr10:246439|246703 hsa-miR-548aj-5p 0 1 0
chr10:246439|246703 hsa-miR-548x-5p 0 1 0
chr10:246439|246703 hsa-miR-548at-3p 0 1 0
chr10:246439|246703 hsa-miR-548d-3p 0 1 0
chr10:246439|246703 hsa-miR-548bb-3p 0 1 0
chr10:246439|246703 hsa-miR-548h-3p 0 1 0
chr10:246439|246703 hsa-miR-548ap-3p 0 1 0
chr10:246439|246703 hsa-miR-548h-5p 0 1 0
chr10:246439|246703 hsa-miR-548am-5p 0 1 0
chr10:246439|246703 hsa-miR-548au-5p 0 1 0
chr10:246439|246703 hsa-miR-548c-5p 0 1 0
chr10:246439|246703 hsa-miR-548o-5p 0 1 0
chr10:246439|246703 hsa-miR-548a-5p 0 1 0
chr10:246439|246703 hsa-miR-548i 0 1 0
chr10:246439|246703 hsa-miR-548ay-5p 0 1 0
chr10:246439|246703 hsa-miR-548ad-5p 0 1 0
chr10:246439|246703 hsa-miR-548ae-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:246439|246703
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MLLHQANRRELPQVALYGRQGPLKP
Nucleotide Sequence TTGCTTTTGCACCAAGCTAACAGACGAGAACTGCCACAGGTCGCACTTTATGGCAGGCAGGGTCCACTGAAGCCC
CircID chr10:246439|246703
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MSTVKDKTNLIYFPLGNSLFIQAMTKPK
Nucleotide Sequence TTGTCGACTGTGAAAGACAAAACAAATCTCATTTATTTTCCGCTTGGTAACAGTTTATTTATTCAAGCCATGACGAAGCCTAAGTGA
CircID chr10:246439|246703
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MRFVLSFTVDKSSQNWIHKCLPIVHNSISLA
Nucleotide Sequence ATGAGATTTGTTTTGTCTTTCACAGTCGACAAAAGTTCTCAGAACTGGATTCACAAATGCCTCCCAATTGTTCACAATTCAATCAGCTTAGCT
CircID chr10:246439|246703
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MPAIKCDLWQFSSVSLVQKQLWVLPLLLIAKTTIT
Nucleotide Sequence CTGCCTGCCATAAAGTGCGACCTGTGGCAGTTCTCGTCTGTTAGCTTGGTGCAAAAGCAATTGTGGGTTCTGCCGTTACTTTTAATTGCGAAAACCACAATCACTTAG
CircID chr10:246439|246703
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MFCLSQSTKVLRTGFTNASQLFTIQSA
Nucleotide Sequence TTGTTTTGTCTTTCACAGTCGACAAAAGTTCTCAGAACTGGATTCACAAATGCCTCCCAATTGTTCACAATTCAATCAGCTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab