CircRNA Information

General Information
circRNA Basic Information
CircID chr10:29421355|29421500
Strand -
CircType exon
Host Gene ENSG00000224597.8;
Algorism CIRI2;
Sequence CCGGCTTTGAGGCAAGGGCCCCATCAAGTAGTCATGCAGTACTTTTGTTAGGGTTCTGGGTGCAAATCTTCCTCGTCCCTCCCACCTTCTCCTGGCCTCCTTGTAAACCCAAACCGCCAGGTACCTCAATTTTCTTCAAGACCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:29421355|29421500 hsa-let-7b-5p 0 0 1
chr10:29421355|29421500 hsa-let-7b-3p 0 0 1
chr10:29421355|29421500 hsa-let-7c-5p 0 0 1
chr10:29421355|29421500 hsa-let-7c-3p 0 0 1
chr10:29421355|29421500 hsa-let-7d-5p 0 0 1
chr10:29421355|29421500 hsa-let-7d-3p 0 0 1
chr10:29421355|29421500 hsa-let-7e-5p 0 0 1
chr10:29421355|29421500 hsa-let-7e-3p 0 0 1
chr10:29421355|29421500 hsa-miR-98-5p 0 0 1
chr10:29421355|29421500 hsa-miR-98-3p 0 0 1
chr10:29421355|29421500 hsa-miR-217-5p 0 0 1
chr10:29421355|29421500 hsa-miR-217-3p 0 0 1
chr10:29421355|29421500 hsa-let-7g-5p 0 0 1
chr10:29421355|29421500 hsa-let-7g-3p 0 0 1
chr10:29421355|29421500 hsa-let-7i-5p 0 0 1
chr10:29421355|29421500 hsa-let-7i-3p 0 0 1
chr10:29421355|29421500 hsa-miR-202-5p 0 0 1
chr10:29421355|29421500 hsa-miR-202-3p 0 0 1
chr10:29421355|29421500 hsa-miR-495-5p 0 0 1
chr10:29421355|29421500 hsa-miR-495-3p 0 0 1
chr10:29421355|29421500 hsa-miR-507 0 0 1
chr10:29421355|29421500 hsa-miR-557 0 1 1
chr10:29421355|29421500 hsa-miR-619-5p 0 0 1
chr10:29421355|29421500 hsa-miR-619-3p 0 0 1
chr10:29421355|29421500 hsa-miR-624-5p 0 0 1
chr10:29421355|29421500 hsa-miR-624-3p 0 0 1
chr10:29421355|29421500 hsa-miR-629-5p 0 0 1
chr10:29421355|29421500 hsa-miR-629-3p 0 0 1
chr10:29421355|29421500 hsa-miR-665 1 0 1
chr10:29421355|29421500 hsa-miR-548k 0 1 1
chr10:29421355|29421500 hsa-miR-548n 0 0 1
chr10:29421355|29421500 hsa-miR-1278 0 0 1
chr10:29421355|29421500 hsa-miR-330-3p 0 0 1
chr10:29421355|29421500 hsa-miR-299-5p 0 0 1
chr10:29421355|29421500 hsa-miR-509-3-5p 0 0 1
chr10:29421355|29421500 hsa-miR-509-5p 0 0 1
chr10:29421355|29421500 hsa-let-7a 0 0 1
chr10:29421355|29421500 hsa-let-7f 0 0 1
chr10:29421355|29421500 hsa-miR-663a 1 0 0
chr10:29421355|29421500 hsa-miR-765 1 0 0
chr10:29421355|29421500 hsa-miR-548p 0 1 0
chr10:29421355|29421500 hsa-miR-2861 1 0 0
chr10:29421355|29421500 hsa-miR-3141 1 0 0
chr10:29421355|29421500 hsa-miR-3154 1 0 0
chr10:29421355|29421500 hsa-miR-548w 1 0 0
chr10:29421355|29421500 hsa-miR-3185 1 0 0
chr10:29421355|29421500 hsa-miR-4270 1 1 0
chr10:29421355|29421500 hsa-miR-4466 1 0 0
chr10:29421355|29421500 hsa-miR-2392 1 0 0
chr10:29421355|29421500 hsa-miR-4516 1 0 0
chr10:29421355|29421500 hsa-miR-4654 1 0 0
chr10:29421355|29421500 hsa-miR-4689 1 0 0
chr10:29421355|29421500 hsa-miR-4706 1 0 0
chr10:29421355|29421500 hsa-miR-4739 1 0 0
chr10:29421355|29421500 hsa-miR-5572 1 0 0
chr10:29421355|29421500 hsa-miR-5703 1 1 0
chr10:29421355|29421500 hsa-miR-6069 1 0 0
chr10:29421355|29421500 hsa-miR-6086 1 0 0
chr10:29421355|29421500 hsa-miR-6090 1 0 0
chr10:29421355|29421500 hsa-miR-6124 1 0 0
chr10:29421355|29421500 hsa-miR-6133 1 0 0
chr10:29421355|29421500 hsa-miR-6134 1 0 0
chr10:29421355|29421500 hsa-miR-6165 1 0 0
chr10:29421355|29421500 hsa-miR-8073 1 0 0
chr10:29421355|29421500 hsa-miR-12114 1 0 0
chr10:29421355|29421500 hsa-miR-12118 0 1 0
chr10:29421355|29421500 hsa-miR-29b-1-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4433b-3p 1 0 0
chr10:29421355|29421500 hsa-miR-92a-2-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4433a-3p 1 0 0
chr10:29421355|29421500 hsa-miR-7106-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6799-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6728-5p 1 0 0
chr10:29421355|29421500 hsa-miR-1227-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6089 1 1 0
chr10:29421355|29421500 hsa-miR-6757-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6880-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4695-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6746-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6730-5p 1 0 0
chr10:29421355|29421500 hsa-miR-7845-5p 1 0 0
chr10:29421355|29421500 hsa-miR-1915-5p 0 1 0
chr10:29421355|29421500 hsa-miR-3663-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6742-5p 1 0 0
chr10:29421355|29421500 hsa-miR-3180-3p 1 0 0
chr10:29421355|29421500 hsa-miR-6748-5p 1 0 0
chr10:29421355|29421500 hsa-miR-3190-3p 1 0 0
chr10:29421355|29421500 hsa-miR-23a-5p 1 0 0
chr10:29421355|29421500 hsa-miR-3126-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6760-5p 1 0 0
chr10:29421355|29421500 hsa-miR-7109-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6740-5p 0 1 0
chr10:29421355|29421500 hsa-miR-4640-5p 1 0 0
chr10:29421355|29421500 hsa-miR-1908-5p 1 0 0
chr10:29421355|29421500 hsa-miR-652-5p 0 1 0
chr10:29421355|29421500 hsa-miR-3202 1 0 0
chr10:29421355|29421500 hsa-miR-6834-5p 1 0 0
chr10:29421355|29421500 hsa-miR-149-3p 1 1 0
chr10:29421355|29421500 hsa-miR-6789-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6802-5p 1 0 0
chr10:29421355|29421500 hsa-miR-654-5p 1 0 0
chr10:29421355|29421500 hsa-miR-3675-5p 0 1 0
chr10:29421355|29421500 hsa-miR-1207-5p 1 0 0
chr10:29421355|29421500 hsa-miR-1233-5p 1 1 0
chr10:29421355|29421500 hsa-miR-4763-3p 1 0 0
chr10:29421355|29421500 hsa-miR-6769b-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6778-5p 1 1 0
chr10:29421355|29421500 hsa-miR-6865-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6870-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6737-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6754-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6756-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6769a-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6815-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6851-5p 1 0 0
chr10:29421355|29421500 hsa-miR-10401-5p 1 0 0
chr10:29421355|29421500 hsa-miR-1249-5p 1 1 0
chr10:29421355|29421500 hsa-miR-6779-5p 1 1 0
chr10:29421355|29421500 hsa-miR-6780a-5p 1 1 0
chr10:29421355|29421500 hsa-miR-6797-5p 1 1 0
chr10:29421355|29421500 hsa-miR-6808-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6875-5p 1 1 0
chr10:29421355|29421500 hsa-miR-6879-5p 1 1 0
chr10:29421355|29421500 hsa-miR-7111-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4728-5p 1 1 0
chr10:29421355|29421500 hsa-miR-5196-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6780b-5p 1 1 0
chr10:29421355|29421500 hsa-miR-10396b-5p 1 0 0
chr10:29421355|29421500 hsa-miR-10526-3p 1 0 0
chr10:29421355|29421500 hsa-miR-328-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4649-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4726-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4749-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6794-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6795-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6858-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6883-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6887-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4436b-3p 1 0 0
chr10:29421355|29421500 hsa-miR-6885-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4769-5p 1 0 0
chr10:29421355|29421500 hsa-miR-4665-5p 1 0 0
chr10:29421355|29421500 hsa-miR-10398-3p 1 0 0
chr10:29421355|29421500 hsa-miR-3173-3p 0 1 0
chr10:29421355|29421500 hsa-miR-6891-5p 1 1 0
chr10:29421355|29421500 hsa-miR-541-3p 1 0 0
chr10:29421355|29421500 hsa-miR-6766-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6785-5p 1 1 0
chr10:29421355|29421500 hsa-miR-3184-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6762-5p 1 0 0
chr10:29421355|29421500 hsa-miR-6807-3p 1 1 0
chr10:29421355|29421500 hsa-miR-372-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:29421355|29421500
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MLGFWVQIFLVPPTFSWPPCKPKPPGTSIFFKTR
Nucleotide Sequence TTGTTAGGGTTCTGGGTGCAAATCTTCCTCGTCCCTCCCACCTTCTCCTGGCCTCCTTGTAAACCCAAACCGCCAGGTACCTCAATTTTCTTCAAGACCAGG
CircID chr10:29421355|29421500
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence LVLKKIEVPGGLGLQGGQEKVGGTRKICTQNPNKSTA
Nucleotide Sequence CTGGTCTTGAAGAAAATTGAGGTACCTGGCGGTTTGGGTTTACAAGGAGGCCAGGAGAAGGTGGGAGGGACGAGGAAGATTTGCACCCAGAACCCTAACAAAAGTACTGCATGA
CircID chr10:29421355|29421500
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MRYLAVWVYKEARRRWEGRGRFAPRTLTKVLHDYLMGPLPQSR
Nucleotide Sequence TTGAGGTACCTGGCGGTTTGGGTTTACAAGGAGGCCAGGAGAAGGTGGGAGGGACGAGGAAGATTTGCACCCAGAACCCTAACAAAAGTACTGCATGACTACTTGATGGGGCCCTTGCCTCAAAGCCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab