CircRNA Information

General Information
circRNA Basic Information
CircID chr10:3777106|3777412
Strand +
CircType exon
Host Gene ENSG00000067082.13;
Algorism CIRI2;
Sequence CTAAGAGTAAGCTAACCACAGGGATTCTTTTGTAGAACACTTTTTATGCAGATGAAGCTATTTTTTCCAGCAAGTAGATTCTTCCAGTTTTTCCAAGGAGTAATTTCCCCGAATTGGCATACCACGGCGTGGACAGCTGATATTTCACCCAGCTGCTGGCTTGTGGGTGTGGCTCTTTGCTTTATATATATATACACACATGTGAGTCTGGCTGGGCTGGTATTTTGTTTGATCTTCCTGGAAATGAGCAGTGACTAACGCTCACATAACTGGTTTTTTTTTTATCTGGGCTGATGAATACATTTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:3777106|3777412 hsa-miR-21-5p 0 0 1
chr10:3777106|3777412 hsa-miR-21-3p 0 0 1
chr10:3777106|3777412 hsa-miR-186-5p 0 0 1
chr10:3777106|3777412 hsa-miR-186-3p 0 0 1
chr10:3777106|3777412 hsa-miR-340-5p 0 0 1
chr10:3777106|3777412 hsa-miR-340-3p 0 0 1
chr10:3777106|3777412 hsa-miR-410-5p 0 0 1
chr10:3777106|3777412 hsa-miR-410-3p 0 0 1
chr10:3777106|3777412 hsa-miR-577 0 0 1
chr10:3777106|3777412 hsa-miR-630 0 0 1
chr10:3777106|3777412 hsa-miR-634 0 0 1
chr10:3777106|3777412 hsa-miR-646 0 0 1
chr10:3777106|3777412 hsa-miR-665 0 0 1
chr10:3777106|3777412 hsa-miR-548e-5p 0 0 1
chr10:3777106|3777412 hsa-miR-548e-3p 0 0 1
chr10:3777106|3777412 hsa-miR-1287-5p 0 0 1
chr10:3777106|3777412 hsa-miR-1287-3p 0 0 1
chr10:3777106|3777412 hsa-miR-1262 0 0 1
chr10:3777106|3777412 hsa-miR-1276 0 0 1
chr10:3777106|3777412 hsa-miR-1283 0 1 1
chr10:3777106|3777412 hsa-miR-542-5p 0 0 1
chr10:3777106|3777412 hsa-miR-142-5p 0 0 1
chr10:3777106|3777412 hsa-miR-339-5p 0 0 1
chr10:3777106|3777412 hsa-miR-1207-3p 0 0 1
chr10:3777106|3777412 hsa-miR-767-3p 0 0 1
chr10:3777106|3777412 hsa-miR-875-3p 0 0 1
chr10:3777106|3777412 hsa-miR-590-5p 0 0 1
chr10:3777106|3777412 hsa-miR-548a-3p 0 0 1
chr10:3777106|3777412 hsa-miR-548d-3p 0 0 1
chr10:3777106|3777412 hsa-miR-1274a 0 0 1
chr10:3777106|3777412 hsa-miR-1274b 0 0 1
chr10:3777106|3777412 hsa-miR-7 0 0 1
chr10:3777106|3777412 hsa-miR-664 0 0 1
chr10:3777106|3777412 hsa-miR-548f 0 0 1
chr10:3777106|3777412 hsa-miR-1270 1 0 0
chr10:3777106|3777412 hsa-miR-3148 0 1 0
chr10:3777106|3777412 hsa-miR-3646 0 1 0
chr10:3777106|3777412 hsa-miR-3671 0 1 0
chr10:3777106|3777412 hsa-miR-5685 0 1 0
chr10:3777106|3777412 hsa-miR-125b-2-3p 0 1 0
chr10:3777106|3777412 hsa-miR-6894-5p 1 0 0
chr10:3777106|3777412 hsa-miR-766-5p 1 0 0
chr10:3777106|3777412 hsa-miR-3074-3p 0 1 0
chr10:3777106|3777412 hsa-miR-146b-3p 0 1 0
chr10:3777106|3777412 hsa-miR-584-3p 1 0 0
chr10:3777106|3777412 hsa-miR-6882-5p 0 1 0
chr10:3777106|3777412 hsa-miR-449b-3p 0 1 0
chr10:3777106|3777412 hsa-miR-6780b-5p 1 0 0
chr10:3777106|3777412 hsa-miR-6736-5p 0 1 0
chr10:3777106|3777412 hsa-miR-4690-3p 0 1 0
chr10:3777106|3777412 hsa-miR-10395-3p 0 1 0
chr10:3777106|3777412 hsa-miR-452-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:3777106|3777412
ORF Type ORF1
Protein Length 70
Nucleotide Length 213
Protein Sequence MQMKLFFPASRFFQFFQGVISPNWHTTAWTADISPSCWLVGVALCFIYIYTHVSLAGLVFCLIFLEMSSD
Nucleotide Sequence ATGCAGATGAAGCTATTTTTTCCAGCAAGTAGATTCTTCCAGTTTTTCCAAGGAGTAATTTCCCCGAATTGGCATACCACGGCGTGGACAGCTGATATTTCACCCAGCTGCTGGCTTGTGGGTGTGGCTCTTTGCTTTATATATATATACACACATGTGAGTCTGGCTGGGCTGGTATTTTGTTTGATCTTCCTGGAAATGAGCAGTGACTAA
CircID chr10:3777106|3777412
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MLACGCGSLLYIYIHTCESGWAGILFDLPGNEQ
Nucleotide Sequence CTGCTGGCTTGTGGGTGTGGCTCTTTGCTTTATATATATATACACACATGTGAGTCTGGCTGGGCTGGTATTTTGTTTGATCTTCCTGGAAATGAGCAGTGA
CircID chr10:3777106|3777412
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MSTPWYANSGKLLLGKTGRIYLLEKIASSA
Nucleotide Sequence CTGTCCACGCCGTGGTATGCCAATTCGGGGAAATTACTCCTTGGAAAAACTGGAAGAATCTACTTGCTGGAAAAAATAGCTTCATCTGCATAA
CircID chr10:3777106|3777412
ORF Type ORF4
Protein Length 79
Nucleotide Length 240
Protein Sequence MLISRKIKQNTSPARLTCVYIYIKQRATPTSQQLGEISAVHAVVCQFGEITPWKNWKNLLAGKNSFICIKSVLQKNPCG
Nucleotide Sequence CTGCTCATTTCCAGGAAGATCAAACAAAATACCAGCCCAGCCAGACTCACATGTGTGTATATATATATAAAGCAAAGAGCCACACCCACAAGCCAGCAGCTGGGTGAAATATCAGCTGTCCACGCCGTGGTATGCCAATTCGGGGAAATTACTCCTTGGAAAAACTGGAAGAATCTACTTGCTGGAAAAAATAGCTTCATCTGCATAAAAAGTGTTCTACAAAAGAATCCCTGTGGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab