CircRNA Information

General Information
circRNA Basic Information
CircID chr10:37952591|37952854
Strand +
CircType exon
Host Gene ENSG00000175395.14;
Algorism CIRI2;
Sequence CACATCTCACAGAACATCAGAAAACACACACAGGGGAGAAACCTTTTGAATGTACTGAATGTGGGAAGTTCTTCTATGTGAAGGCATACCTCATGGTACATCAGAAAACACACACAGGGGAGAAACCCTATGAGTGTAAGGAGTGTGGGAAAGCCTTTTCCCAGAAGTCACACCTCACAGTACATCAGAGAATGCACACAGGGGAGAAACCCTATAAATGTAAGGAATGTGGGAAATTCTTCTCTAGGAATTCACACCTCAAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:37952591|37952854 hsa-let-7b-5p 0 0 1
chr10:37952591|37952854 hsa-let-7b-3p 0 0 1
chr10:37952591|37952854 hsa-let-7c-5p 0 0 1
chr10:37952591|37952854 hsa-let-7c-3p 0 0 1
chr10:37952591|37952854 hsa-let-7d-5p 0 0 1
chr10:37952591|37952854 hsa-let-7d-3p 0 0 1
chr10:37952591|37952854 hsa-let-7e-5p 0 0 1
chr10:37952591|37952854 hsa-let-7e-3p 0 0 1
chr10:37952591|37952854 hsa-miR-23a-5p 0 0 1
chr10:37952591|37952854 hsa-miR-23a-3p 0 0 1
chr10:37952591|37952854 hsa-miR-98-5p 0 0 1
chr10:37952591|37952854 hsa-miR-98-3p 0 0 1
chr10:37952591|37952854 hsa-miR-181c-5p 0 0 1
chr10:37952591|37952854 hsa-miR-181c-3p 0 0 1
chr10:37952591|37952854 hsa-let-7g-5p 0 0 1
chr10:37952591|37952854 hsa-let-7g-3p 0 0 1
chr10:37952591|37952854 hsa-let-7i-5p 0 0 1
chr10:37952591|37952854 hsa-let-7i-3p 0 0 1
chr10:37952591|37952854 hsa-miR-23b-5p 0 0 1
chr10:37952591|37952854 hsa-miR-23b-3p 0 0 1
chr10:37952591|37952854 hsa-miR-143-5p 0 0 1
chr10:37952591|37952854 hsa-miR-143-3p 0 0 1
chr10:37952591|37952854 hsa-miR-134-5p 0 0 1
chr10:37952591|37952854 hsa-miR-134-3p 0 0 1
chr10:37952591|37952854 hsa-miR-376c-5p 0 0 1
chr10:37952591|37952854 hsa-miR-376c-3p 0 0 1
chr10:37952591|37952854 hsa-miR-384 0 1 1
chr10:37952591|37952854 hsa-miR-202-5p 0 0 1
chr10:37952591|37952854 hsa-miR-202-3p 0 0 1
chr10:37952591|37952854 hsa-miR-181d-5p 0 0 1
chr10:37952591|37952854 hsa-miR-181d-3p 0 0 1
chr10:37952591|37952854 hsa-miR-617 0 0 1
chr10:37952591|37952854 hsa-miR-892a 0 0 1
chr10:37952591|37952854 hsa-miR-1294 0 1 1
chr10:37952591|37952854 hsa-miR-1304-5p 0 0 1
chr10:37952591|37952854 hsa-miR-1304-3p 0 0 1
chr10:37952591|37952854 hsa-miR-1253 0 0 1
chr10:37952591|37952854 hsa-miR-1257 0 0 1
chr10:37952591|37952854 hsa-miR-296-3p 0 0 1
chr10:37952591|37952854 hsa-miR-532-5p 0 0 1
chr10:37952591|37952854 hsa-miR-331-3p 0 0 1
chr10:37952591|37952854 hsa-miR-188-3p 0 1 1
chr10:37952591|37952854 hsa-miR-576-3p 0 0 1
chr10:37952591|37952854 hsa-miR-483-3p 0 0 1
chr10:37952591|37952854 hsa-miR-1260 0 0 1
chr10:37952591|37952854 hsa-miR-181a 0 0 1
chr10:37952591|37952854 hsa-miR-181b 0 0 1
chr10:37952591|37952854 hsa-let-7a 0 0 1
chr10:37952591|37952854 hsa-let-7f 0 0 1
chr10:37952591|37952854 hsa-miR-3164 1 1 0
chr10:37952591|37952854 hsa-miR-4314 0 1 0
chr10:37952591|37952854 hsa-miR-4273 0 1 0
chr10:37952591|37952854 hsa-miR-3911 1 1 0
chr10:37952591|37952854 hsa-miR-7703 0 1 0
chr10:37952591|37952854 hsa-miR-12116 0 1 0
chr10:37952591|37952854 hsa-miR-6747-5p 1 0 0
chr10:37952591|37952854 hsa-miR-3692-3p 0 1 0
chr10:37952591|37952854 hsa-miR-6793-5p 1 0 0
chr10:37952591|37952854 hsa-miR-30c-2-3p 0 1 0
chr10:37952591|37952854 hsa-miR-6780a-3p 0 1 0
chr10:37952591|37952854 hsa-miR-146b-3p 0 1 0
chr10:37952591|37952854 hsa-miR-181b-5p 0 1 0
chr10:37952591|37952854 hsa-miR-660-3p 1 0 0
chr10:37952591|37952854 hsa-miR-6812-5p 1 1 0
chr10:37952591|37952854 hsa-miR-6737-5p 1 0 0
chr10:37952591|37952854 hsa-miR-6752-5p 1 0 0
chr10:37952591|37952854 hsa-miR-6819-5p 1 0 0
chr10:37952591|37952854 hsa-miR-7110-5p 1 0 0
chr10:37952591|37952854 hsa-miR-4646-5p 0 1 0
chr10:37952591|37952854 hsa-miR-3689d 1 0 0
chr10:37952591|37952854 hsa-miR-10522-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr10:37952591|37952854
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MSVRSVGKPFPRSHTSQYIRECTQGRNPINVRNVGNSSLGIHTSK
Nucleotide Sequence ATGAGTGTAAGGAGTGTGGGAAAGCCTTTTCCCAGAAGTCACACCTCACAGTACATCAGAGAATGCACACAGGGGAGAAACCCTATAAATGTAAGGAATGTGGGAAATTCTTCTCTAGGAATTCACACCTCAAAA

CircID chr10:37952591|37952854
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MVHQKTHTGEKPYECKECGKAFSQKSHLTVHQRMHTGEKPYKCKECGKFFSRNSHLK
Nucleotide Sequence ATGGTACATCAGAAAACACACACAGGGGAGAAACCCTATGAGTGTAAGGAGTGTGGGAAAGCCTTTTCCCAGAAGTCACACCTCACAGTACATCAGAGAATGCACACAGGGGAGAAACCCTATAAATGTAAGGAATGTGGGAAATTCTTCTCTAGGAATTCACACCTCAAA

CircID chr10:37952591|37952854
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MPSHRRTSHIQYIQKVSPLCVFSDVL
Nucleotide Sequence ATGCCTTCACATAGAAGAACTTCCCACATTCAGTACATTCAAAAGGTTTCTCCCCTGTGTGTGTTTTCTGATGTTCTGTGA

CircID chr10:37952591|37952854
ORF Type ORF4
Protein Length 54
Nucleotide Length 162
Protein Sequence MGKGFPTLLTLIGFLPCVCFLMYHEVCLHIEELPTFSTFKRFLPCVCFLMFCEM
Nucleotide Sequence CTGGGAAAAGGCTTTCCCACACTCCTTACACTCATAGGGTTTCTCCCCTGTGTGTGTTTTCTGATGTACCATGAGGTATGCCTTCACATAGAAGAACTTCCCACATTCAGTACATTCAAAAGGTTTCTCCCCTGTGTGTGTTTTCTGATGTTCTGTGAGATG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites