CircRNA Information

General Information
circRNA Basic Information
CircID chr10:44377875|44378115
Strand -
CircType exon
Host Gene ENSG00000107562.15;
Algorism CIRI2;
Sequence CCTCTTCCCGGCTGGTGCGGCGCTGATCAGGCTACAGAAATGAGAAGCAGAAGCAAGATTAAGCATGCTCTCGGAGTCGGGGAGAGAGTAGGAATAGCTGGGAGAGGGGTCTCTGAGCACAGTCCCAGTAATAGTGGCTTCTACATGGAGCCCACAGAGCCAATCACTGAGGTTGAAAGAGGAGGTGAAGGCAGTGGCGGCGCCCAGCCCCAGTCGGTATCTGAGTGCCACAGAGGCCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:44377875|44378115 hsa-miR-150-5p 0 0 1
chr10:44377875|44378115 hsa-miR-150-3p 0 0 1
chr10:44377875|44378115 hsa-miR-383-5p 0 0 1
chr10:44377875|44378115 hsa-miR-383-3p 0 0 1
chr10:44377875|44378115 hsa-miR-412-5p 0 0 1
chr10:44377875|44378115 hsa-miR-412-3p 0 0 1
chr10:44377875|44378115 hsa-miR-596 0 0 1
chr10:44377875|44378115 hsa-miR-760 0 1 1
chr10:44377875|44378115 hsa-miR-1226-5p 0 0 1
chr10:44377875|44378115 hsa-miR-1226-3p 0 0 1
chr10:44377875|44378115 hsa-miR-1305 0 0 1
chr10:44377875|44378115 hsa-miR-532-3p 0 0 1
chr10:44377875|44378115 hsa-miR-509-3p 0 0 1
chr10:44377875|44378115 hsa-miR-1201 0 0 1
chr10:44377875|44378115 hsa-miR-762 1 1 0
chr10:44377875|44378115 hsa-miR-933 1 0 0
chr10:44377875|44378115 hsa-miR-3137 1 1 0
chr10:44377875|44378115 hsa-miR-4296 0 1 0
chr10:44377875|44378115 hsa-miR-4322 0 1 0
chr10:44377875|44378115 hsa-miR-4265 0 1 0
chr10:44377875|44378115 hsa-miR-3685 0 1 0
chr10:44377875|44378115 hsa-miR-4492 1 1 0
chr10:44377875|44378115 hsa-miR-4493 0 1 0
chr10:44377875|44378115 hsa-miR-4498 0 1 0
chr10:44377875|44378115 hsa-miR-4508 1 1 0
chr10:44377875|44378115 hsa-miR-5193 1 1 0
chr10:44377875|44378115 hsa-miR-5696 0 1 0
chr10:44377875|44378115 hsa-miR-8057 0 1 0
chr10:44377875|44378115 hsa-miR-9899 1 1 0
chr10:44377875|44378115 hsa-miR-134-3p 0 1 0
chr10:44377875|44378115 hsa-miR-671-5p 1 0 0
chr10:44377875|44378115 hsa-miR-6892-3p 1 1 0
chr10:44377875|44378115 hsa-miR-6881-3p 0 1 0
chr10:44377875|44378115 hsa-miR-7110-3p 1 1 0
chr10:44377875|44378115 hsa-miR-6787-3p 1 1 0
chr10:44377875|44378115 hsa-miR-185-3p 0 1 0
chr10:44377875|44378115 hsa-miR-6882-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6788-3p 1 1 0
chr10:44377875|44378115 hsa-miR-4786-3p 0 1 0
chr10:44377875|44378115 hsa-miR-6803-3p 1 0 0
chr10:44377875|44378115 hsa-miR-3677-3p 1 0 0
chr10:44377875|44378115 hsa-miR-7111-3p 1 0 0
chr10:44377875|44378115 hsa-miR-1306-5p 0 1 0
chr10:44377875|44378115 hsa-miR-6769a-3p 1 0 0
chr10:44377875|44378115 hsa-miR-4632-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6746-3p 0 1 0
chr10:44377875|44378115 hsa-miR-6826-3p 0 1 0
chr10:44377875|44378115 hsa-miR-4649-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6777-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6846-3p 1 0 0
chr10:44377875|44378115 hsa-miR-676-5p 0 1 0
chr10:44377875|44378115 hsa-miR-6800-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6890-3p 0 1 0
chr10:44377875|44378115 hsa-miR-6731-3p 0 1 0
chr10:44377875|44378115 hsa-miR-5001-5p 0 1 0
chr10:44377875|44378115 hsa-miR-320a-5p 0 1 0
chr10:44377875|44378115 hsa-miR-6754-3p 0 1 0
chr10:44377875|44378115 hsa-miR-6848-5p 1 0 0
chr10:44377875|44378115 hsa-miR-3199 0 1 0
chr10:44377875|44378115 hsa-miR-5008-3p 0 1 0
chr10:44377875|44378115 hsa-miR-6855-5p 1 1 0
chr10:44377875|44378115 hsa-miR-324-3p 0 1 0
chr10:44377875|44378115 hsa-miR-4757-5p 1 1 0
chr10:44377875|44378115 hsa-miR-6862-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6829-3p 1 0 0
chr10:44377875|44378115 hsa-miR-10400-3p 0 1 0
chr10:44377875|44378115 hsa-miR-4723-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6744-3p 0 1 0
chr10:44377875|44378115 hsa-miR-6781-3p 1 0 0
chr10:44377875|44378115 hsa-miR-6737-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:44377875|44378115
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence MRSRSKIKHALGVGERVGIAGRGVSEHSPSNSGFYMEPTEPITEVERGGEGSGGAQPQSVSECHRGL
Nucleotide Sequence ATGAGAAGCAGAAGCAAGATTAAGCATGCTCTCGGAGTCGGGGAGAGAGTAGGAATAGCTGGGAGAGGGGTCTCTGAGCACAGTCCCAGTAATAGTGGCTTCTACATGGAGCCCACAGAGCCAATCACTGAGGTTGAAAGAGGAGGTGAAGGCAGTGGCGGCGCCCAGCCCCAGTCGGTATCTGAGTGCCACAGAGGCCTT
CircID chr10:44377875|44378115
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MGEGSLSTVPVIVASTWSPQSQSLRLKEEVKAVAAPSPSRYLSATEAF
Nucleotide Sequence CTGGGAGAGGGGTCTCTGAGCACAGTCCCAGTAATAGTGGCTTCTACATGGAGCCCACAGAGCCAATCACTGAGGTTGAAAGAGGAGGTGAAGGCAGTGGCGGCGCCCAGCCCCAGTCGGTATCTGAGTGCCACAGAGGCCTTC
CircID chr10:44377875|44378115
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MALWAPCRSHYYWDCAQRPLSQLFLLSPRLREHA
Nucleotide Sequence TTGGCTCTGTGGGCTCCATGTAGAAGCCACTATTACTGGGACTGTGCTCAGAGACCCCTCTCCCAGCTATTCCTACTCTCTCCCCGACTCCGAGAGCATGCTTAA
CircID chr10:44377875|44378115
ORF Type ORF4
Protein Length 71
Nucleotide Length 213
Protein Sequence MGLGAATAFTSSFNLSDWLCGLHVEATITGTVLRDPSPSYSYSLPDSESMLNLASASHFCSLISAAPAGKR
Nucleotide Sequence CTGGGGCTGGGCGCCGCCACTGCCTTCACCTCCTCTTTCAACCTCAGTGATTGGCTCTGTGGGCTCCATGTAGAAGCCACTATTACTGGGACTGTGCTCAGAGACCCCTCTCCCAGCTATTCCTACTCTCTCCCCGACTCCGAGAGCATGCTTAATCTTGCTTCTGCTTCTCATTTCTGTAGCCTGATCAGCGCCGCACCAGCCGGGAAGAGG
CircID chr10:44377875|44378115
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MWHSDTDWGWAPPLPSPPLSTSVIGSVGSM
Nucleotide Sequence CTGTGGCACTCAGATACCGACTGGGGCTGGGCGCCGCCACTGCCTTCACCTCCTCTTTCAACCTCAGTGATTGGCTCTGTGGGCTCCATGTAG
CircID chr10:44377875|44378115
ORF Type ORF6
Protein Length 33
Nucleotide Length 102
Protein Sequence MGLCSETPLPAIPTLSPTPRACLILLLLLISVA
Nucleotide Sequence CTGGGACTGTGCTCAGAGACCCCTCTCCCAGCTATTCCTACTCTCTCCCCGACTCCGAGAGCATGCTTAATCTTGCTTCTGCTTCTCATTTCTGTAGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab