CircRNA Information

General Information
circRNA Basic Information
CircID chr10:44378192|44378327
Strand -
CircType exon
Host Gene ENSG00000107562.15;
Algorism CIRI2;
Sequence CACCTGACTGTGCCCAGACTCCCCAGGGGAGCAGAGGAGATGCTCCAAACAAGCCAAATTCAGATCTTGAAGTACTCGTTGATTTAAAAAATGAGAATGAGAATGATGATGATTGTGATGATCATGAAGGAACTAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:44378192|44378327 hsa-miR-205-5p 0 0 1
chr10:44378192|44378327 hsa-miR-205-3p 0 0 1
chr10:44378192|44378327 hsa-miR-433-5p 0 0 1
chr10:44378192|44378327 hsa-miR-433-3p 0 0 1
chr10:44378192|44378327 hsa-miR-612 0 0 1
chr10:44378192|44378327 hsa-miR-939-5p 0 0 1
chr10:44378192|44378327 hsa-miR-939-3p 0 0 1
chr10:44378192|44378327 hsa-miR-125a-3p 0 0 1
chr10:44378192|44378327 hsa-miR-331-3p 0 0 1
chr10:44378192|44378327 hsa-miR-767-3p 0 0 1
chr10:44378192|44378327 hsa-miR-1285 0 0 1
chr10:44378192|44378327 hsa-miR-768-5p 0 0 1
chr10:44378192|44378327 hsa-miR-768-3p 0 0 1
chr10:44378192|44378327 hsa-miR-637 1 0 0
chr10:44378192|44378327 hsa-miR-4294 1 0 0
chr10:44378192|44378327 hsa-miR-5698 1 0 0
chr10:44378192|44378327 hsa-miR-6860 0 1 0
chr10:44378192|44378327 hsa-miR-8089 1 0 0
chr10:44378192|44378327 hsa-miR-7155-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6861-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6825-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6857-5p 1 0 0
chr10:44378192|44378327 hsa-miR-7114-5p 1 0 0
chr10:44378192|44378327 hsa-miR-3192-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6842-3p 1 0 0
chr10:44378192|44378327 hsa-miR-95-3p 0 1 0
chr10:44378192|44378327 hsa-miR-6728-3p 0 1 0
chr10:44378192|44378327 hsa-miR-6810-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6852-5p 1 1 0
chr10:44378192|44378327 hsa-miR-6780a-3p 0 1 0
chr10:44378192|44378327 hsa-miR-6824-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6828-3p 0 1 0
chr10:44378192|44378327 hsa-miR-501-5p 1 0 0
chr10:44378192|44378327 hsa-miR-1273h-5p 1 0 0
chr10:44378192|44378327 hsa-miR-1343-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6752-5p 1 0 0
chr10:44378192|44378327 hsa-miR-7110-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6763-5p 1 1 0
chr10:44378192|44378327 hsa-miR-5189-5p 0 1 0
chr10:44378192|44378327 hsa-miR-6777-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6848-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6889-5p 1 1 0
chr10:44378192|44378327 hsa-miR-4700-5p 1 0 0
chr10:44378192|44378327 hsa-miR-6791-5p 1 1 0
chr10:44378192|44378327 hsa-miR-6827-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:44378192|44378327
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MTVPRLPRGAEEMLQTSQIQILKYSLI
Nucleotide Sequence CTGACTGTGCCCAGACTCCCCAGGGGAGCAGAGGAGATGCTCCAAACAAGCCAAATTCAGATCTTGAAGTACTCGTTGATTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab