CircRNA Information

General Information
circRNA Basic Information
CircID chr10:44378520|44378723
Strand -
CircType exon
Host Gene ENSG00000107562.15;
Algorism CIRI2;
Sequence ACCTGGTCCTCATGGTTAAGGCCCCCTCCCCCACGTCTTTGCCCTTTCATCTCTCACAAGGTTTTAGTTTTCCTCGAGTGGGTCTAGCGGAAAGTCCTTTTTGGCTGTTGTGCTTACTTGTTTAAAGCTTTCTCCAGGTACTCCTGAATCCACTTTAGCTTCGGGTCAATGCACACTTGTCTGTTGTTGTTCTTCAGCCGGGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:44378520|44378723 hsa-miR-17-5p 0 0 1
chr10:44378520|44378723 hsa-miR-17-3p 0 0 1
chr10:44378520|44378723 hsa-miR-20a-5p 0 0 1
chr10:44378520|44378723 hsa-miR-20a-3p 0 0 1
chr10:44378520|44378723 hsa-miR-33a-5p 0 0 1
chr10:44378520|44378723 hsa-miR-33a-3p 0 0 1
chr10:44378520|44378723 hsa-miR-93-5p 0 0 1
chr10:44378520|44378723 hsa-miR-93-3p 0 0 1
chr10:44378520|44378723 hsa-miR-106a-5p 0 0 1
chr10:44378520|44378723 hsa-miR-106a-3p 0 0 1
chr10:44378520|44378723 hsa-miR-143-5p 0 0 1
chr10:44378520|44378723 hsa-miR-143-3p 0 0 1
chr10:44378520|44378723 hsa-miR-106b-5p 0 0 1
chr10:44378520|44378723 hsa-miR-106b-3p 0 0 1
chr10:44378520|44378723 hsa-miR-20b-5p 0 0 1
chr10:44378520|44378723 hsa-miR-20b-3p 0 0 1
chr10:44378520|44378723 hsa-miR-488-5p 0 0 1
chr10:44378520|44378723 hsa-miR-488-3p 0 0 1
chr10:44378520|44378723 hsa-miR-519d-5p 0 0 1
chr10:44378520|44378723 hsa-miR-519d-3p 0 0 1
chr10:44378520|44378723 hsa-miR-572 0 0 1
chr10:44378520|44378723 hsa-miR-595 0 1 1
chr10:44378520|44378723 hsa-miR-611 0 0 1
chr10:44378520|44378723 hsa-miR-619-5p 0 0 1
chr10:44378520|44378723 hsa-miR-619-3p 0 0 1
chr10:44378520|44378723 hsa-miR-625-5p 0 0 1
chr10:44378520|44378723 hsa-miR-625-3p 0 0 1
chr10:44378520|44378723 hsa-miR-33b-5p 0 0 1
chr10:44378520|44378723 hsa-miR-33b-3p 0 0 1
chr10:44378520|44378723 hsa-miR-648 0 0 1
chr10:44378520|44378723 hsa-miR-1275 0 1 1
chr10:44378520|44378723 hsa-miR-1224-5p 0 0 1
chr10:44378520|44378723 hsa-miR-151-5p 0 0 1
chr10:44378520|44378723 hsa-miR-663a 1 0 0
chr10:44378520|44378723 hsa-miR-1291 1 0 0
chr10:44378520|44378723 hsa-miR-3911 1 0 0
chr10:44378520|44378723 hsa-miR-4496 1 0 0
chr10:44378520|44378723 hsa-miR-4531 0 1 0
chr10:44378520|44378723 hsa-miR-4651 1 0 0
chr10:44378520|44378723 hsa-miR-4654 1 0 0
chr10:44378520|44378723 hsa-miR-4656 1 0 0
chr10:44378520|44378723 hsa-miR-4688 1 0 0
chr10:44378520|44378723 hsa-miR-4739 1 0 0
chr10:44378520|44378723 hsa-miR-5698 1 0 0
chr10:44378520|44378723 hsa-miR-6088 1 1 0
chr10:44378520|44378723 hsa-miR-6124 1 0 0
chr10:44378520|44378723 hsa-miR-6863 0 1 0
chr10:44378520|44378723 hsa-miR-12119 1 0 0
chr10:44378520|44378723 hsa-miR-4433b-3p 1 0 0
chr10:44378520|44378723 hsa-miR-7-5p 0 1 0
chr10:44378520|44378723 hsa-miR-6833-5p 1 0 0
chr10:44378520|44378723 hsa-miR-5187-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6757-5p 1 1 0
chr10:44378520|44378723 hsa-miR-3064-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6730-5p 1 0 0
chr10:44378520|44378723 hsa-miR-491-5p 1 0 0
chr10:44378520|44378723 hsa-miR-3151-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6782-5p 1 0 0
chr10:44378520|44378723 hsa-miR-3667-5p 0 1 0
chr10:44378520|44378723 hsa-miR-1226-5p 1 0 0
chr10:44378520|44378723 hsa-miR-3202 1 0 0
chr10:44378520|44378723 hsa-miR-149-3p 1 0 0
chr10:44378520|44378723 hsa-miR-6824-5p 1 0 0
chr10:44378520|44378723 hsa-miR-941 1 0 0
chr10:44378520|44378723 hsa-miR-6878-5p 0 1 0
chr10:44378520|44378723 hsa-miR-4638-5p 1 0 0
chr10:44378520|44378723 hsa-miR-1180-5p 0 1 0
chr10:44378520|44378723 hsa-miR-6513-3p 0 1 0
chr10:44378520|44378723 hsa-miR-4796-3p 0 1 0
chr10:44378520|44378723 hsa-miR-7844-5p 0 1 0
chr10:44378520|44378723 hsa-miR-5003-5p 0 1 0
chr10:44378520|44378723 hsa-miR-1233-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6778-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6870-5p 1 1 0
chr10:44378520|44378723 hsa-miR-1343-5p 1 0 0
chr10:44378520|44378723 hsa-miR-5001-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6743-5p 1 1 0
chr10:44378520|44378723 hsa-miR-6752-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6756-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6803-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6819-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6842-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6851-5p 1 0 0
chr10:44378520|44378723 hsa-miR-10401-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6779-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6788-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6879-5p 1 1 0
chr10:44378520|44378723 hsa-miR-7111-5p 1 0 0
chr10:44378520|44378723 hsa-miR-5196-5p 1 0 0
chr10:44378520|44378723 hsa-miR-1237-5p 1 0 0
chr10:44378520|44378723 hsa-miR-328-5p 1 0 0
chr10:44378520|44378723 hsa-miR-4632-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6729-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6846-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6848-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6887-5p 1 0 0
chr10:44378520|44378723 hsa-miR-4723-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6758-5p 1 0 0
chr10:44378520|44378723 hsa-miR-6785-5p 0 1 0
chr10:44378520|44378723 hsa-miR-6849-5p 1 1 0
chr10:44378520|44378723 hsa-miR-6529-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr10:44378520|44378723
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MAVVLTCLKLSPGTPESTLASGQCTLVCCCSSAG
Nucleotide Sequence TTGGCTGTTGTGCTTACTTGTTTAAAGCTTTCTCCAGGTACTCCTGAATCCACTTTAGCTTCGGGTCAATGCACACTTGTCTGTTGTTGTTCTTCAGCCGGG
CircID chr10:44378520|44378723
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence LVLMVKAPSPTSLPFHLSQGFSFPRVGLAESPFWLLCLLV
Nucleotide Sequence CTGGTCCTCATGGTTAAGGCCCCCTCCCCCACGTCTTTGCCCTTTCATCTCTCACAAGGTTTTAGTTTTCCTCGAGTGGGTCTAGCGGAAAGTCCTTTTTGGCTGTTGTGCTTACTTGTTTAA
CircID chr10:44378520|44378723
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MKNNNRQVCIDPKLKWIQEYLEKALNK
Nucleotide Sequence CTGAAGAACAACAACAGACAAGTGTGCATTGACCCGAAGCTAAAGTGGATTCAGGAGTACCTGGAGAAAGCTTTAAACAAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab