CircRNA Information

General Information
circRNA Basic Information
CircID chr10:44971372|44971607
Strand +
CircType exon
Host Gene ENSG00000107551.19;
Algorism CIRI2;
Sequence CCGGATGGTTCTGCACATGGCCCTGGTGGGGGGCATGGGGGTCGGGCTGAGGAGGAGGCGAGACTCACGGGACAGGCCTGCGTCTGGTCCAGGATGTCCAGGGTGCCGACACTTTCACTATCACAGGTAAGGCCCTGGCAGCCTCCCTGCCCTCCACCTGCGTTGCTTCCTCACAGTAAATGCCCTGGACTTGCTTTTGGCATTGTACAGCCTCTTGCTTTTCCCCATATCACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:44971372|44971607 hsa-miR-627-5p 0 0 1
chr10:44971372|44971607 hsa-miR-627-3p 0 0 1
chr10:44971372|44971607 hsa-miR-298 0 0 1
chr10:44971372|44971607 hsa-miR-892a 0 0 1
chr10:44971372|44971607 hsa-miR-190b-5p 0 0 1
chr10:44971372|44971607 hsa-miR-190b-3p 0 0 1
chr10:44971372|44971607 hsa-miR-924 0 0 1
chr10:44971372|44971607 hsa-miR-1294 0 0 1
chr10:44971372|44971607 hsa-miR-1281 1 1 1
chr10:44971372|44971607 hsa-miR-1321 0 0 1
chr10:44971372|44971607 hsa-miR-485-5p 0 1 1
chr10:44971372|44971607 hsa-miR-1207-5p 1 1 1
chr10:44971372|44971607 hsa-miR-190 0 0 1
chr10:44971372|44971607 hsa-miR-650 1 0 0
chr10:44971372|44971607 hsa-miR-663a 1 0 0
chr10:44971372|44971607 hsa-miR-762 1 0 0
chr10:44971372|44971607 hsa-miR-921 1 0 0
chr10:44971372|44971607 hsa-miR-1183 1 0 0
chr10:44971372|44971607 hsa-miR-1275 1 0 0
chr10:44971372|44971607 hsa-miR-2110 1 0 0
chr10:44971372|44971607 hsa-miR-3125 1 0 0
chr10:44971372|44971607 hsa-miR-3132 1 0 0
chr10:44971372|44971607 hsa-miR-3153 1 0 0
chr10:44971372|44971607 hsa-miR-3188 1 0 0
chr10:44971372|44971607 hsa-miR-4308 0 1 0
chr10:44971372|44971607 hsa-miR-4271 1 1 0
chr10:44971372|44971607 hsa-miR-3621 1 0 0
chr10:44971372|44971607 hsa-miR-3665 1 1 0
chr10:44971372|44971607 hsa-miR-3908 0 1 0
chr10:44971372|44971607 hsa-miR-3918 0 1 0
chr10:44971372|44971607 hsa-miR-3937 1 0 0
chr10:44971372|44971607 hsa-miR-4498 1 0 0
chr10:44971372|44971607 hsa-miR-4512 1 1 0
chr10:44971372|44971607 hsa-miR-3978 1 0 0
chr10:44971372|44971607 hsa-miR-4657 1 0 0
chr10:44971372|44971607 hsa-miR-4675 1 0 0
chr10:44971372|44971607 hsa-miR-4688 1 0 0
chr10:44971372|44971607 hsa-miR-4689 1 0 0
chr10:44971372|44971607 hsa-miR-4706 1 0 0
chr10:44971372|44971607 hsa-miR-4729 0 1 0
chr10:44971372|44971607 hsa-miR-4739 1 0 0
chr10:44971372|44971607 hsa-miR-4741 1 0 0
chr10:44971372|44971607 hsa-miR-4780 1 0 0
chr10:44971372|44971607 hsa-miR-5090 1 0 0
chr10:44971372|44971607 hsa-miR-5193 0 1 0
chr10:44971372|44971607 hsa-miR-6069 1 0 0
chr10:44971372|44971607 hsa-miR-6124 0 1 0
chr10:44971372|44971607 hsa-miR-6127 1 0 0
chr10:44971372|44971607 hsa-miR-7974 1 0 0
chr10:44971372|44971607 hsa-miR-12114 1 1 0
chr10:44971372|44971607 hsa-miR-12115 0 1 0
chr10:44971372|44971607 hsa-miR-12120 1 0 0
chr10:44971372|44971607 hsa-miR-12127 1 0 0
chr10:44971372|44971607 hsa-miR-6749-3p 1 0 0
chr10:44971372|44971607 hsa-miR-6734-5p 1 0 0
chr10:44971372|44971607 hsa-miR-31-5p 1 0 0
chr10:44971372|44971607 hsa-miR-504-3p 1 0 0
chr10:44971372|44971607 hsa-miR-6765-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6836-3p 1 1 0
chr10:44971372|44971607 hsa-miR-671-5p 1 0 0
chr10:44971372|44971607 hsa-miR-3150a-3p 1 0 0
chr10:44971372|44971607 hsa-miR-6857-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6799-5p 1 0 0
chr10:44971372|44971607 hsa-miR-1236-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6515-5p 0 1 0
chr10:44971372|44971607 hsa-miR-6089 1 0 0
chr10:44971372|44971607 hsa-miR-3192-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6880-5p 1 1 0
chr10:44971372|44971607 hsa-miR-7847-3p 1 1 0
chr10:44971372|44971607 hsa-miR-4695-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6746-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4722-5p 1 1 0
chr10:44971372|44971607 hsa-miR-6890-5p 1 0 0
chr10:44971372|44971607 hsa-miR-197-5p 1 0 0
chr10:44971372|44971607 hsa-miR-1915-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6845-3p 1 0 0
chr10:44971372|44971607 hsa-miR-6783-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6796-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6760-5p 1 0 0
chr10:44971372|44971607 hsa-miR-5006-5p 0 1 0
chr10:44971372|44971607 hsa-miR-6735-3p 1 0 0
chr10:44971372|44971607 hsa-miR-6786-5p 1 0 0
chr10:44971372|44971607 hsa-miR-1226-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4793-5p 0 1 0
chr10:44971372|44971607 hsa-miR-6784-5p 0 1 0
chr10:44971372|44971607 hsa-miR-4640-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6753-5p 0 1 0
chr10:44971372|44971607 hsa-miR-1908-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6501-5p 1 1 0
chr10:44971372|44971607 hsa-miR-4638-3p 0 1 0
chr10:44971372|44971607 hsa-miR-3690 0 1 0
chr10:44971372|44971607 hsa-miR-149-3p 1 1 0
chr10:44971372|44971607 hsa-miR-3616-3p 0 1 0
chr10:44971372|44971607 hsa-miR-6802-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6886-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6878-5p 1 1 0
chr10:44971372|44971607 hsa-miR-4776-5p 0 1 0
chr10:44971372|44971607 hsa-miR-7112-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6895-5p 0 1 0
chr10:44971372|44971607 hsa-miR-3940-3p 1 1 0
chr10:44971372|44971607 hsa-miR-625-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6872-3p 1 1 0
chr10:44971372|44971607 hsa-miR-6859-3p 0 1 0
chr10:44971372|44971607 hsa-miR-6880-3p 1 0 0
chr10:44971372|44971607 hsa-miR-6748-3p 1 1 0
chr10:44971372|44971607 hsa-miR-3184-3p 1 0 0
chr10:44971372|44971607 hsa-miR-3620-3p 0 1 0
chr10:44971372|44971607 hsa-miR-4433b-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4679 0 1 0
chr10:44971372|44971607 hsa-miR-5581-3p 0 1 0
chr10:44971372|44971607 hsa-miR-6503-3p 0 1 0
chr10:44971372|44971607 hsa-miR-1233-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4763-3p 1 1 0
chr10:44971372|44971607 hsa-miR-6778-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6787-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6870-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6893-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6775-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6743-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6752-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6754-5p 0 1 0
chr10:44971372|44971607 hsa-miR-6769a-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6851-5p 1 0 0
chr10:44971372|44971607 hsa-miR-10401-5p 1 0 0
chr10:44971372|44971607 hsa-miR-1249-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6763-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6797-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6808-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6879-5p 1 1 0
chr10:44971372|44971607 hsa-miR-7111-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6780b-5p 1 0 0
chr10:44971372|44971607 hsa-miR-1909-3p 1 0 0
chr10:44971372|44971607 hsa-miR-328-5p 1 1 0
chr10:44971372|44971607 hsa-miR-4632-5p 1 1 0
chr10:44971372|44971607 hsa-miR-4685-5p 1 1 0
chr10:44971372|44971607 hsa-miR-4725-3p 1 0 0
chr10:44971372|44971607 hsa-miR-4726-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4749-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6729-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6735-5p 1 1 0
chr10:44971372|44971607 hsa-miR-6848-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6858-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4436b-3p 0 1 0
chr10:44971372|44971607 hsa-miR-6885-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4769-5p 1 0 0
chr10:44971372|44971607 hsa-miR-4665-5p 1 0 0
chr10:44971372|44971607 hsa-miR-6785-5p 1 0 0
chr10:44971372|44971607 hsa-miR-7107-3p 1 0 0
chr10:44971372|44971607 hsa-miR-6829-3p 1 1 0
chr10:44971372|44971607 hsa-miR-6837-5p 0 1 0
chr10:44971372|44971607 hsa-miR-4756-5p 0 1 0
chr10:44971372|44971607 hsa-miR-6884-5p 0 1 0
chr10:44971372|44971607 hsa-miR-455-3p 0 1 0
chr10:44971372|44971607 hsa-miR-548e-5p 0 1 0
chr10:44971372|44971607 hsa-miR-130a-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:44971372|44971607
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence MSRVPTLSLSQVRPWQPPCPPPALLPHSKCPGLAFGIVQPLAFPHIT
Nucleotide Sequence ATGTCCAGGGTGCCGACACTTTCACTATCACAGGTAAGGCCCTGGCAGCCTCCCTGCCCTCCACCTGCGTTGCTTCCTCACAGTAAATGCCCTGGACTTGCTTTTGGCATTGTACAGCCTCTTGCTTTTCCCCATATCACT
CircID chr10:44971372|44971607
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MVLHMALVGGMGVGLRRRRDSRDRPASGPGCPGCRHFHYHR
Nucleotide Sequence ATGGTTCTGCACATGGCCCTGGTGGGGGGCATGGGGGTCGGGCTGAGGAGGAGGCGAGACTCACGGGACAGGCCTGCGTCTGGTCCAGGATGTCCAGGGTGCCGACACTTTCACTATCACAGGTAA
CircID chr10:44971372|44971607
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MRCFLTVNALDLLLALYSLLLFPISL
Nucleotide Sequence CTGCGTTGCTTCCTCACAGTAAATGCCCTGGACTTGCTTTTGGCATTGTACAGCCTCTTGCTTTTCCCCATATCACTT
CircID chr10:44971372|44971607
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MRLVQDVQGADTFTITGKALAASLPSTCVASSQ
Nucleotide Sequence CTGCGTCTGGTCCAGGATGTCCAGGGTGCCGACACTTTCACTATCACAGGTAAGGCCCTGGCAGCCTCCCTGCCCTCCACCTGCGTTGCTTCCTCACAGTAA
CircID chr10:44971372|44971607
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MDILDQTQACPVSLASSSARPPCPPPGPCAEPS
Nucleotide Sequence CTGGACATCCTGGACCAGACGCAGGCCTGTCCCGTGAGTCTCGCCTCCTCCTCAGCCCGACCCCCATGCCCCCCACCAGGGCCATGTGCAGAACCATCC
CircID chr10:44971372|44971607
ORF Type ORF6
Protein Length 35
Nucleotide Length 108
Protein Sequence MGKSKRLYNAKSKSRAFTVRKQRRWRAGRLPGPYL
Nucleotide Sequence ATGGGGAAAAGCAAGAGGCTGTACAATGCCAAAAGCAAGTCCAGGGCATTTACTGTGAGGAAGCAACGCAGGTGGAGGGCAGGGAGGCTGCCAGGGCCTTACCTGTGA
CircID chr10:44971372|44971607
ORF Type ORF7
Protein Length 25
Nucleotide Length 75
Protein Sequence MSRESRLLLSPTPMPPTRAMCRTIR
Nucleotide Sequence CTGTCCCGTGAGTCTCGCCTCCTCCTCAGCCCGACCCCCATGCCCCCCACCAGGGCCATGTGCAGAACCATCCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab