CircRNA Information

General Information
circRNA Basic Information
CircID chr10:44993458|44993596
Strand -
CircType exon
Host Gene ENSG00000107551.19;
Algorism CIRI2;
Sequence CTCTCTGAAGCCTGAGCACCATGATTCCCACAGCCAGCTCTTGGCTCCAAGATGAGCACCCACAGGAAGCCGACCCAGGCCTGAGGGGCCAGGAACTTGCTGGGTCAGATCTGTGTGGCCAGCCCTGTCCACACCATGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:44993458|44993596 hsa-miR-335-5p 0 0 1
chr10:44993458|44993596 hsa-miR-335-3p 0 0 1
chr10:44993458|44993596 hsa-miR-484 0 0 1
chr10:44993458|44993596 hsa-miR-432-5p 0 0 1
chr10:44993458|44993596 hsa-miR-432-3p 0 0 1
chr10:44993458|44993596 hsa-miR-588 0 1 1
chr10:44993458|44993596 hsa-miR-661 1 1 1
chr10:44993458|44993596 hsa-miR-516a-3p 0 0 1
chr10:44993458|44993596 hsa-miR-886-5p 0 0 1
chr10:44993458|44993596 hsa-miR-612 1 0 0
chr10:44993458|44993596 hsa-miR-762 1 0 0
chr10:44993458|44993596 hsa-miR-2861 1 0 0
chr10:44993458|44993596 hsa-miR-3138 0 1 0
chr10:44993458|44993596 hsa-miR-4296 1 0 0
chr10:44993458|44993596 hsa-miR-4322 1 0 0
chr10:44993458|44993596 hsa-miR-3907 0 1 0
chr10:44993458|44993596 hsa-miR-4487 0 1 0
chr10:44993458|44993596 hsa-miR-4492 0 1 0
chr10:44993458|44993596 hsa-miR-4498 1 1 0
chr10:44993458|44993596 hsa-miR-4507 1 0 0
chr10:44993458|44993596 hsa-miR-4508 1 0 0
chr10:44993458|44993596 hsa-miR-4654 1 0 0
chr10:44993458|44993596 hsa-miR-4741 1 0 0
chr10:44993458|44993596 hsa-miR-6069 1 0 0
chr10:44993458|44993596 hsa-miR-6860 1 0 0
chr10:44993458|44993596 hsa-miR-6861-5p 1 0 0
chr10:44993458|44993596 hsa-miR-6857-5p 1 0 0
chr10:44993458|44993596 hsa-miR-4687-3p 1 0 0
chr10:44993458|44993596 hsa-miR-3064-5p 0 1 0
chr10:44993458|44993596 hsa-miR-505-5p 0 1 0
chr10:44993458|44993596 hsa-miR-6741-5p 1 1 0
chr10:44993458|44993596 hsa-miR-6716-5p 1 0 0
chr10:44993458|44993596 hsa-miR-6796-5p 1 0 0
chr10:44993458|44993596 hsa-miR-185-3p 1 0 0
chr10:44993458|44993596 hsa-miR-656-5p 1 0 0
chr10:44993458|44993596 hsa-miR-6514-5p 1 0 0
chr10:44993458|44993596 hsa-miR-6810-5p 1 0 0
chr10:44993458|44993596 hsa-miR-3934-3p 0 1 0
chr10:44993458|44993596 hsa-miR-3944-3p 1 0 0
chr10:44993458|44993596 hsa-miR-1229-5p 1 0 0
chr10:44993458|44993596 hsa-miR-542-5p 1 0 0
chr10:44993458|44993596 hsa-miR-4640-5p 1 0 0
chr10:44993458|44993596 hsa-miR-296-3p 1 0 0
chr10:44993458|44993596 hsa-miR-6749-5p 1 0 0
chr10:44993458|44993596 hsa-miR-4446-3p 1 1 0
chr10:44993458|44993596 hsa-miR-6742-3p 0 1 0
chr10:44993458|44993596 hsa-miR-7112-5p 1 0 0
chr10:44993458|44993596 hsa-miR-1233-5p 1 0 0
chr10:44993458|44993596 hsa-miR-4763-3p 1 0 0
chr10:44993458|44993596 hsa-miR-6778-5p 1 0 0
chr10:44993458|44993596 hsa-miR-5001-5p 0 1 0
chr10:44993458|44993596 hsa-miR-6813-5p 1 0 0
chr10:44993458|44993596 hsa-miR-7107-5p 1 0 0
chr10:44993458|44993596 hsa-miR-6879-5p 1 0 0
chr10:44993458|44993596 hsa-miR-3620-5p 1 0 0
chr10:44993458|44993596 hsa-miR-6836-5p 1 0 0
chr10:44993458|44993596 hsa-miR-675-5p 1 0 0
chr10:44993458|44993596 hsa-miR-6762-5p 0 1 0
chr10:44993458|44993596 hsa-miR-4701-5p 0 1 0
chr10:44993458|44993596 hsa-miR-6504-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:44993458|44993596
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MSTMIPTASSWLQDEHPQEADPGLRGQELAGSDLCGQPCPHH
Nucleotide Sequence CTGAGCACCATGATTCCCACAGCCAGCTCTTGGCTCCAAGATGAGCACCCACAGGAAGCCGACCCAGGCCTGAGGGGCCAGGAACTTGCTGGGTCAGATCTGTGTGGCCAGCCCTGTCCACACCAT
CircID chr10:44993458|44993596
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MTQQVPGPSGLGRLPVGAHLGAKSWLWESWCSGFRE
Nucleotide Sequence CTGACCCAGCAAGTTCCTGGCCCCTCAGGCCTGGGTCGGCTTCCTGTGGGTGCTCATCTTGGAGCCAAGAGCTGGCTGTGGGAATCATGGTGCTCAGGCTTCAGAGAG
CircID chr10:44993458|44993596
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MAPQAWVGFLWVLILEPRAGCGNHGAQASE
Nucleotide Sequence CTGGCCCCTCAGGCCTGGGTCGGCTTCCTGTGGGTGCTCATCTTGGAGCCAAGAGCTGGCTGTGGGAATCATGGTGCTCAGGCTTCAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab