CircRNA Information

General Information
circRNA Basic Information
CircID chr10:45445526|45445683
Strand -
CircType exon
Host Gene ENSG00000012779.9;
Algorism CIRI2;
Sequence CCAGAAGAGCATTTTATCGAGAAGCCTGTGAAGGAAGCCATGGCCCGATTCCGCAAGAACCTCGAGGCCATTGTCAGCGTGATTGCTGAGCGCAACAAGAAGAAGCAGCTGCCATATTACTACTTGTCCCCAGACCGGATTCCGAACAGTGTGGCCAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:45445526|45445683 hsa-miR-27a-5p 0 0 1
chr10:45445526|45445683 hsa-miR-27a-3p 0 0 1
chr10:45445526|45445683 hsa-miR-183-5p 0 0 1
chr10:45445526|45445683 hsa-miR-183-3p 0 0 1
chr10:45445526|45445683 hsa-miR-205-5p 0 0 1
chr10:45445526|45445683 hsa-miR-205-3p 0 0 1
chr10:45445526|45445683 hsa-miR-27b-5p 0 0 1
chr10:45445526|45445683 hsa-miR-27b-3p 0 0 1
chr10:45445526|45445683 hsa-miR-135b-5p 0 0 1
chr10:45445526|45445683 hsa-miR-135b-3p 0 0 1
chr10:45445526|45445683 hsa-miR-545-5p 0 0 1
chr10:45445526|45445683 hsa-miR-545-3p 0 0 1
chr10:45445526|45445683 hsa-miR-578 0 1 1
chr10:45445526|45445683 hsa-miR-588 0 1 1
chr10:45445526|45445683 hsa-miR-637 1 0 1
chr10:45445526|45445683 hsa-miR-1208 0 1 1
chr10:45445526|45445683 hsa-miR-885-3p 0 0 1
chr10:45445526|45445683 hsa-miR-516a-5p 0 0 1
chr10:45445526|45445683 hsa-miR-513a-5p 0 0 1
chr10:45445526|45445683 hsa-miR-516a-3p 0 1 1
chr10:45445526|45445683 hsa-miR-220c 0 0 1
chr10:45445526|45445683 hsa-miR-135a 0 0 1
chr10:45445526|45445683 hsa-miR-1231 1 0 0
chr10:45445526|45445683 hsa-miR-4438 0 1 0
chr10:45445526|45445683 hsa-miR-4705 0 1 0
chr10:45445526|45445683 hsa-miR-4748 1 0 0
chr10:45445526|45445683 hsa-miR-5047 1 0 0
chr10:45445526|45445683 hsa-miR-8089 1 1 0
chr10:45445526|45445683 hsa-miR-11399 1 0 0
chr10:45445526|45445683 hsa-miR-103a-2-5p 1 0 0
chr10:45445526|45445683 hsa-miR-6089 1 0 0
chr10:45445526|45445683 hsa-miR-1301-3p 1 0 0
chr10:45445526|45445683 hsa-miR-6810-5p 1 1 0
chr10:45445526|45445683 hsa-miR-6850-5p 0 1 0
chr10:45445526|45445683 hsa-miR-6508-3p 0 1 0
chr10:45445526|45445683 hsa-miR-6770-3p 1 1 0
chr10:45445526|45445683 hsa-miR-10400-5p 1 0 0
chr10:45445526|45445683 hsa-miR-7107-5p 1 0 0
chr10:45445526|45445683 hsa-miR-10392-5p 1 0 0
chr10:45445526|45445683 hsa-miR-328-5p 1 0 0
chr10:45445526|45445683 hsa-miR-4632-5p 1 0 0
chr10:45445526|45445683 hsa-miR-4700-5p 0 1 0
chr10:45445526|45445683 hsa-miR-4667-5p 0 1 0
chr10:45445526|45445683 hsa-miR-103a-1-5p 1 1 0
chr10:45445526|45445683 hsa-miR-516b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr10:45445526|45445683
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MARFRKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVA
Nucleotide Sequence ATGGCCCGATTCCGCAAGAACCTCGAGGCCATTGTCAGCGTGATTGCTGAGCGCAACAAGAAGAAGCAGCTGCCATATTACTACTTGTCCCCAGACCGGATTCCGAACAGTGTGGCC

CircID chr10:45445526|45445683
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MLSATRRSSCHITTCPQTGFRTVWP
Nucleotide Sequence TTGCTGAGCGCAACAAGAAGAAGCAGCTGCCATATTACTACTTGTCCCCAGACCGGATTCCGAACAGTGTGGCCA

CircID chr10:45445526|45445683
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MLRSAITLTMASRFLRNRAMASFTGFSIKCSS
Nucleotide Sequence TTGTTGCGCTCAGCAATCACGCTGACAATGGCCTCGAGGTTCTTGCGGAATCGGGCCATGGCTTCCTTCACAGGCTTCTCGATAAAATGCTCTTCT

CircID chr10:45445526|45445683
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MLLLVALSNHADNGLEVLAESGHGFLHRLLDKMLFW
Nucleotide Sequence CTGCTTCTTCTTGTTGCGCTCAGCAATCACGCTGACAATGGCCTCGAGGTTCTTGCGGAATCGGGCCATGGCTTCCTTCACAGGCTTCTCGATAAAATGCTCTTCTGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites