CircRNA Information

General Information
circRNA Basic Information
CircID chr10:45457146|45457456
Strand -
CircType exon
Host Gene ENSG00000165406.14;
Algorism CIRI2;
Sequence CCCGGCCAGGGTGGCACATGGCTGCTCTTTCAATGTGAAGCCAACACCAACTGGAGAGATTTAACTATAAAGGAATATTTTTTAAATATTCAGTTTTGTTGTCATTACTCACTTCCTTTCCTTCCATTTCGATCTCAGAAACTGTTCTTTTTCAGTGTTGACAAAAAAGAAATGTATGGGCCAGGTCTACAAAGTAACACCTTGTCATAAAACAGGCTCAAAAGCATAGGAATCATGCTTTAATTGCCATTTAGCATCCACTAATTCCCATGAGATCTGTGATTAAAAAAAAAGCCTCTGGCCTGCTTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:45457146|45457456 hsa-miR-23a-5p 0 0 1
chr10:45457146|45457456 hsa-miR-23a-3p 0 0 1
chr10:45457146|45457456 hsa-miR-23b-5p 0 0 1
chr10:45457146|45457456 hsa-miR-23b-3p 0 0 1
chr10:45457146|45457456 hsa-miR-141-5p 0 0 1
chr10:45457146|45457456 hsa-miR-141-3p 0 0 1
chr10:45457146|45457456 hsa-miR-200a-5p 0 0 1
chr10:45457146|45457456 hsa-miR-200a-3p 0 0 1
chr10:45457146|45457456 hsa-miR-34b-5p 0 0 1
chr10:45457146|45457456 hsa-miR-34b-3p 0 0 1
chr10:45457146|45457456 hsa-miR-425-5p 0 0 1
chr10:45457146|45457456 hsa-miR-425-3p 0 0 1
chr10:45457146|45457456 hsa-miR-488-5p 0 0 1
chr10:45457146|45457456 hsa-miR-488-3p 0 0 1
chr10:45457146|45457456 hsa-miR-522-5p 0 0 1
chr10:45457146|45457456 hsa-miR-522-3p 0 0 1
chr10:45457146|45457456 hsa-miR-505-5p 0 0 1
chr10:45457146|45457456 hsa-miR-505-3p 0 0 1
chr10:45457146|45457456 hsa-miR-624-5p 0 0 1
chr10:45457146|45457456 hsa-miR-624-3p 0 0 1
chr10:45457146|45457456 hsa-miR-631 1 1 1
chr10:45457146|45457456 hsa-miR-1323 0 0 1
chr10:45457146|45457456 hsa-miR-766-5p 0 0 1
chr10:45457146|45457456 hsa-miR-766-3p 0 0 1
chr10:45457146|45457456 hsa-miR-216b-5p 0 0 1
chr10:45457146|45457456 hsa-miR-216b-3p 0 0 1
chr10:45457146|45457456 hsa-miR-1227-5p 0 0 1
chr10:45457146|45457456 hsa-miR-1227-3p 0 0 1
chr10:45457146|45457456 hsa-miR-548e-5p 0 0 1
chr10:45457146|45457456 hsa-miR-548e-3p 0 0 1
chr10:45457146|45457456 hsa-miR-548o-3p 0 0 1
chr10:45457146|45457456 hsa-miR-1276 0 0 1
chr10:45457146|45457456 hsa-miR-1252-5p 0 0 1
chr10:45457146|45457456 hsa-miR-1252-3p 0 0 1
chr10:45457146|45457456 hsa-miR-548o 0 0 1
chr10:45457146|45457456 hsa-miR-129-5p 0 0 1
chr10:45457146|45457456 hsa-miR-145-5p 0 0 1
chr10:45457146|45457456 hsa-miR-455-5p 0 0 1
chr10:45457146|45457456 hsa-miR-337-3p 0 0 1
chr10:45457146|45457456 hsa-miR-548a-3p 0 0 1
chr10:45457146|45457456 hsa-miR-1308 0 0 1
chr10:45457146|45457456 hsa-miR-548f 0 0 1
chr10:45457146|45457456 hsa-miR-549 0 0 1
chr10:45457146|45457456 hsa-miR-638 1 0 0
chr10:45457146|45457456 hsa-miR-2278 0 1 0
chr10:45457146|45457456 hsa-miR-3174 0 1 0
chr10:45457146|45457456 hsa-miR-3188 1 0 0
chr10:45457146|45457456 hsa-miR-3661 0 1 0
chr10:45457146|45457456 hsa-miR-4450 1 0 0
chr10:45457146|45457456 hsa-miR-4504 0 1 0
chr10:45457146|45457456 hsa-miR-4514 1 0 0
chr10:45457146|45457456 hsa-miR-4641 0 1 0
chr10:45457146|45457456 hsa-miR-4673 1 0 0
chr10:45457146|45457456 hsa-miR-6131 1 0 0
chr10:45457146|45457456 hsa-miR-12115 1 0 0
chr10:45457146|45457456 hsa-miR-4435 1 0 0
chr10:45457146|45457456 hsa-miR-7106-5p 1 0 0
chr10:45457146|45457456 hsa-miR-1972 1 0 0
chr10:45457146|45457456 hsa-miR-6089 1 0 0
chr10:45457146|45457456 hsa-miR-6741-5p 1 0 0
chr10:45457146|45457456 hsa-miR-6721-5p 1 0 0
chr10:45457146|45457456 hsa-miR-6871-5p 1 1 0
chr10:45457146|45457456 hsa-miR-4640-5p 1 0 0
chr10:45457146|45457456 hsa-miR-4715-3p 0 1 0
chr10:45457146|45457456 hsa-miR-4690-5p 1 1 0
chr10:45457146|45457456 hsa-miR-6749-5p 1 0 0
chr10:45457146|45457456 hsa-miR-6895-5p 1 0 0
chr10:45457146|45457456 hsa-miR-3681-5p 0 1 0
chr10:45457146|45457456 hsa-miR-6801-5p 1 0 0
chr10:45457146|45457456 hsa-miR-214-3p 1 0 0
chr10:45457146|45457456 hsa-miR-4766-5p 0 1 0
chr10:45457146|45457456 hsa-miR-6754-5p 1 0 0
chr10:45457146|45457456 hsa-miR-6797-5p 1 1 0
chr10:45457146|45457456 hsa-miR-4726-5p 1 0 0
chr10:45457146|45457456 hsa-miR-6735-5p 1 0 0
chr10:45457146|45457456 hsa-miR-3619-5p 1 0 0
chr10:45457146|45457456 hsa-miR-10397-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:45457146|45457456
ORF Type ORF1
Protein Length 62
Nucleotide Length 189
Protein Sequence MLFQCEANTNWRDLTIKEYFLNIQFCCHYSLPFLPFRSQKLFFFSVDKKEMYGPGLQSNTLS
Nucleotide Sequence CTGCTCTTTCAATGTGAAGCCAACACCAACTGGAGAGATTTAACTATAAAGGAATATTTTTTAAATATTCAGTTTTGTTGTCATTACTCACTTCCTTTCCTTCCATTTCGATCTCAGAAACTGTTCTTTTTCAGTGTTGACAAAAAAGAAATGTATGGGCCAGGTCTACAAAGTAACACCTTGTCATAA
CircID chr10:45457146|45457456
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MERFNYKGIFFKYSVLLSLLTSFPSISISETVLFQC
Nucleotide Sequence CTGGAGAGATTTAACTATAAAGGAATATTTTTTAAATATTCAGTTTTGTTGTCATTACTCACTTCCTTTCCTTCCATTTCGATCTCAGAAACTGTTCTTTTTCAGTGTTGA
CircID chr10:45457146|45457456
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MIPMLLSLFYDKVLLCRPGPYISFLSTLKKNSF
Nucleotide Sequence ATGATTCCTATGCTTTTGAGCCTGTTTTATGACAAGGTGTTACTTTGTAGACCTGGCCCATACATTTCTTTTTTGTCAACACTGAAAAAGAACAGTTTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab