CircRNA Information

General Information
circRNA Basic Information
CircID chr10:46014910|46015230
Strand +
CircType exon
Host Gene ENSG00000266412.4;
Algorism CIRI2;
Sequence CTGGAATGTCTTAGAAGCCGTGAGGTATGGCTGTATGAACAGGTGGACCTTATTTATCAGCTTAAAGAGGAGACACTTCAACAGCAGGCTCAGCAGCTCTACTCGGTAAGGTGACTGCATGGCTAGAATTGGTTTGAGCATGGCTTCTGGTTGCCAGAGAGTATCTTCCTTGTAATGCAGTGTTAATATAGATCAGATAGAAGTTTAATCTCAAGTGCTGTTTGGTAACTTGAGTATATCTGGTGCTTTTGGTGTCATTGTGGCTAGTTGGTTTCATTTTTCTTTTAGTTATTGGGCCAGTTCAATTGTCTTACTCATCAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:46014910|46015230 hsa-miR-29a-5p 0 0 1
chr10:46014910|46015230 hsa-miR-29a-3p 0 0 1
chr10:46014910|46015230 hsa-miR-217-5p 0 0 1
chr10:46014910|46015230 hsa-miR-217-3p 0 0 1
chr10:46014910|46015230 hsa-miR-141-5p 0 0 1
chr10:46014910|46015230 hsa-miR-141-3p 0 0 1
chr10:46014910|46015230 hsa-miR-29c-5p 0 0 1
chr10:46014910|46015230 hsa-miR-29c-3p 0 0 1
chr10:46014910|46015230 hsa-miR-200a-5p 0 0 1
chr10:46014910|46015230 hsa-miR-200a-3p 0 0 1
chr10:46014910|46015230 hsa-miR-370-5p 0 0 1
chr10:46014910|46015230 hsa-miR-370-3p 0 0 1
chr10:46014910|46015230 hsa-miR-326 0 0 1
chr10:46014910|46015230 hsa-miR-425-5p 0 0 1
chr10:46014910|46015230 hsa-miR-425-3p 0 0 1
chr10:46014910|46015230 hsa-miR-193b-5p 0 0 1
chr10:46014910|46015230 hsa-miR-193b-3p 0 0 1
chr10:46014910|46015230 hsa-miR-558 0 0 1
chr10:46014910|46015230 hsa-miR-573 0 0 1
chr10:46014910|46015230 hsa-miR-596 0 0 1
chr10:46014910|46015230 hsa-miR-624-5p 0 0 1
chr10:46014910|46015230 hsa-miR-624-3p 0 0 1
chr10:46014910|46015230 hsa-miR-641 0 0 1
chr10:46014910|46015230 hsa-miR-653-5p 0 0 1
chr10:46014910|46015230 hsa-miR-653-3p 0 0 1
chr10:46014910|46015230 hsa-miR-656-5p 0 0 1
chr10:46014910|46015230 hsa-miR-656-3p 0 0 1
chr10:46014910|46015230 hsa-miR-888-5p 0 0 1
chr10:46014910|46015230 hsa-miR-888-3p 0 0 1
chr10:46014910|46015230 hsa-miR-1206 0 0 1
chr10:46014910|46015230 hsa-miR-1267 0 0 1
chr10:46014910|46015230 hsa-miR-875-5p 0 0 1
chr10:46014910|46015230 hsa-miR-485-3p 0 0 1
chr10:46014910|46015230 hsa-miR-330-5p 0 0 1
chr10:46014910|46015230 hsa-miR-193a-3p 0 0 1
chr10:46014910|46015230 hsa-miR-371-5p 0 0 1
chr10:46014910|46015230 hsa-miR-768-3p 0 0 1
chr10:46014910|46015230 hsa-miR-29b 0 0 1
chr10:46014910|46015230 hsa-miR-4515 1 0 0
chr10:46014910|46015230 hsa-miR-3944-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:46014910|46015230
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence LECLRSREVWLYEQVDLIYQLKEETLQQQAQQLYSVR
Nucleotide Sequence CTGGAATGTCTTAGAAGCCGTGAGGTATGGCTGTATGAACAGGTGGACCTTATTTATCAGCTTAAAGAGGAGACACTTCAACAGCAGGCTCAGCAGCTCTACTCGGTAAGGTGA
CircID chr10:46014910|46015230
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MFGNLSISGAFGVIVASWFHFSFSYWASSIVLLI
Nucleotide Sequence CTGTTTGGTAACTTGAGTATATCTGGTGCTTTTGGTGTCATTGTGGCTAGTTGGTTTCATTTTTCTTTTAGTTATTGGGCCAGTTCAATTGTCTTACTCATC
CircID chr10:46014910|46015230
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MVLLVSLWLVGFIFLLVIGPVQLSYSS
Nucleotide Sequence CTGGTGCTTTTGGTGTCATTGTGGCTAGTTGGTTTCATTTTTCTTTTAGTTATTGGGCCAGTTCAATTGTCTTACTCATCA
CircID chr10:46014910|46015230
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MHYKEDTLWQPEAMLKPILAMQSPYRVELLSLLLKCLLFKLINKVHLFIQPYLTASKTFQ
Nucleotide Sequence CTGCATTACAAGGAAGATACTCTCTGGCAACCAGAAGCCATGCTCAAACCAATTCTAGCCATGCAGTCACCTTACCGAGTAGAGCTGCTGAGCCTGCTGTTGAAGTGTCTCCTCTTTAAGCTGATAAATAAGGTCCACCTGTTCATACAGCCATACCTCACGGCTTCTAAGACATTCCAG
CircID chr10:46014910|46015230
ORF Type ORF5
Protein Length 71
Nucleotide Length 216
Protein Sequence MKPTSHNDTKSTRYTQVTKQHLRLNFYLIYINTALQGRYSLATRSHAQTNSSHAVTLPSRAAEPAVEVSPL
Nucleotide Sequence ATGAAACCAACTAGCCACAATGACACCAAAAGCACCAGATATACTCAAGTTACCAAACAGCACTTGAGATTAAACTTCTATCTGATCTATATTAACACTGCATTACAAGGAAGATACTCTCTGGCAACCAGAAGCCATGCTCAAACCAATTCTAGCCATGCAGTCACCTTACCGAGTAGAGCTGCTGAGCCTGCTGTTGAAGTGTCTCCTCTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab