CircRNA Information

General Information
circRNA Basic Information
CircID chr10:49978279|49978494
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TTGGGCTCTGCACACCAGGGAAAATGACCACAAAACATCCCATCTTCACTGCTCAGAGAAGGCTAGATCTGCTGTGAGCTAGGAAGCCATGTGGGGGCAGCTGATGAGTCATCAAATGGGAGAAATCTGAGAGCCATGTGTTCCACAGGCCTCTGGTCCTTGTTCAGGCAGCAGGGCACTGTGAGATGTGGCTCCTTGGCCCTTTCCAGCCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:49978279|49978494 hsa-miR-22-5p 0 0 1
chr10:49978279|49978494 hsa-miR-22-3p 0 0 1
chr10:49978279|49978494 hsa-miR-27a-5p 0 0 1
chr10:49978279|49978494 hsa-miR-27a-3p 0 0 1
chr10:49978279|49978494 hsa-miR-27b-5p 0 0 1
chr10:49978279|49978494 hsa-miR-27b-3p 0 0 1
chr10:49978279|49978494 hsa-miR-150-5p 0 0 1
chr10:49978279|49978494 hsa-miR-150-3p 0 0 1
chr10:49978279|49978494 hsa-miR-370-5p 0 0 1
chr10:49978279|49978494 hsa-miR-370-3p 0 0 1
chr10:49978279|49978494 hsa-miR-135b-5p 0 0 1
chr10:49978279|49978494 hsa-miR-135b-3p 0 0 1
chr10:49978279|49978494 hsa-miR-384 0 0 1
chr10:49978279|49978494 hsa-miR-874-5p 0 0 1
chr10:49978279|49978494 hsa-miR-874-3p 0 0 1
chr10:49978279|49978494 hsa-miR-760 0 0 1
chr10:49978279|49978494 hsa-miR-922 0 0 1
chr10:49978279|49978494 hsa-miR-942-5p 0 0 1
chr10:49978279|49978494 hsa-miR-942-3p 0 0 1
chr10:49978279|49978494 hsa-miR-532-3p 1 0 1
chr10:49978279|49978494 hsa-miR-146b-3p 0 0 1
chr10:49978279|49978494 hsa-miR-1207-3p 0 0 1
chr10:49978279|49978494 hsa-miR-875-3p 0 0 1
chr10:49978279|49978494 hsa-miR-324-3p 0 0 1
chr10:49978279|49978494 hsa-miR-342-3p 0 0 1
chr10:49978279|49978494 hsa-miR-516a-3p 0 0 1
chr10:49978279|49978494 hsa-miR-1274a 0 0 1
chr10:49978279|49978494 hsa-miR-128 0 0 1
chr10:49978279|49978494 hsa-miR-135a 0 0 1
chr10:49978279|49978494 hsa-miR-1201 0 0 1
chr10:49978279|49978494 hsa-miR-1913 0 1 0
chr10:49978279|49978494 hsa-miR-4303 0 1 0
chr10:49978279|49978494 hsa-miR-3943 1 0 0
chr10:49978279|49978494 hsa-miR-4430 0 1 0
chr10:49978279|49978494 hsa-miR-4647 0 1 0
chr10:49978279|49978494 hsa-miR-7978 0 1 0
chr10:49978279|49978494 hsa-miR-9985 0 1 0
chr10:49978279|49978494 hsa-miR-128-3p 0 1 0
chr10:49978279|49978494 hsa-miR-6875-3p 1 0 0
chr10:49978279|49978494 hsa-miR-6735-3p 0 1 0
chr10:49978279|49978494 hsa-miR-4713-5p 1 1 0
chr10:49978279|49978494 hsa-miR-204-3p 0 1 0
chr10:49978279|49978494 hsa-miR-4640-5p 0 1 0
chr10:49978279|49978494 hsa-miR-216a-3p 0 1 0
chr10:49978279|49978494 hsa-miR-3160-5p 0 1 0
chr10:49978279|49978494 hsa-miR-5589-3p 1 1 0
chr10:49978279|49978494 hsa-miR-3670 1 1 0
chr10:49978279|49978494 hsa-miR-449b-3p 0 1 0
chr10:49978279|49978494 hsa-miR-1287-3p 0 1 0
chr10:49978279|49978494 hsa-miR-371b-3p 0 1 0
chr10:49978279|49978494 hsa-miR-135a-5p 0 1 0
chr10:49978279|49978494 hsa-miR-6737-5p 1 0 0
chr10:49978279|49978494 hsa-miR-320a-5p 0 1 0
chr10:49978279|49978494 hsa-miR-4726-5p 0 1 0
chr10:49978279|49978494 hsa-miR-6846-5p 1 0 0
chr10:49978279|49978494 hsa-miR-6848-5p 1 1 0
chr10:49978279|49978494 hsa-miR-6762-5p 0 1 0
chr10:49978279|49978494 hsa-miR-6893-3p 0 1 0
chr10:49978279|49978494 hsa-miR-487a-5p 0 1 0
chr10:49978279|49978494 hsa-miR-7162-5p 0 1 0
chr10:49978279|49978494 hsa-miR-4653-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:49978279|49978494
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MRAMCSTGLWSLFRQQGTVRCGSLALSSHH
Nucleotide Sequence CTGAGAGCCATGTGTTCCACAGGCCTCTGGTCCTTGTTCAGGCAGCAGGGCACTGTGAGATGTGGCTCCTTGGCCCTTTCCAGCCACCAC
CircID chr10:49978279|49978494
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MERAKEPHLTVPCCLNKDQRPVEHMALRFLPFDDSSAAPTWLPSSQQI
Nucleotide Sequence CTGGAAAGGGCCAAGGAGCCACATCTCACAGTGCCCTGCTGCCTGAACAAGGACCAGAGGCCTGTGGAACACATGGCTCTCAGATTTCTCCCATTTGATGACTCATCAGCTGCCCCCACATGGCTTCCTAGCTCACAGCAGATCTAG
CircID chr10:49978279|49978494
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MWNTWLSDFSHLMTHQLPPHGFLAHSRSSLL
Nucleotide Sequence CTGTGGAACACATGGCTCTCAGATTTCTCCCATTTGATGACTCATCAGCTGCCCCCACATGGCTTCCTAGCTCACAGCAGATCTAGCCTTCTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab