CircRNA Information

General Information
circRNA Basic Information
CircID chr10:52454586|52454736
Strand -
CircType exon
Host Gene ENSG00000231131.5;
Algorism CIRI2;
Sequence CTCCATCTTCACTGGCTGCCCCTTCTCAGTCTCCTTTGCTGGCTCTTCCTCATCTTCCAGTTTACAATGGAGTGTCTCAGGGCTCCGTCTTCAGACTTCTTCCCTTTTCTATTTACATTCACTTCCTCCATGATCTCACTCAGTCTCACGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:52454586|52454736 hsa-miR-30a-5p 0 0 1
chr10:52454586|52454736 hsa-miR-30a-3p 0 0 1
chr10:52454586|52454736 hsa-miR-30d-5p 0 0 1
chr10:52454586|52454736 hsa-miR-30d-3p 0 0 1
chr10:52454586|52454736 hsa-miR-30b-5p 0 0 1
chr10:52454586|52454736 hsa-miR-30b-3p 0 0 1
chr10:52454586|52454736 hsa-miR-136-5p 0 0 1
chr10:52454586|52454736 hsa-miR-136-3p 0 0 1
chr10:52454586|52454736 hsa-miR-30e-5p 0 0 1
chr10:52454586|52454736 hsa-miR-30e-3p 0 0 1
chr10:52454586|52454736 hsa-miR-545-5p 0 0 1
chr10:52454586|52454736 hsa-miR-545-3p 0 0 1
chr10:52454586|52454736 hsa-miR-575 0 1 1
chr10:52454586|52454736 hsa-miR-765 1 0 1
chr10:52454586|52454736 hsa-miR-1253 0 0 1
chr10:52454586|52454736 hsa-miR-1257 1 0 1
chr10:52454586|52454736 hsa-miR-548g-5p 0 0 1
chr10:52454586|52454736 hsa-miR-548g-3p 0 0 1
chr10:52454586|52454736 hsa-miR-486-3p 1 1 1
chr10:52454586|52454736 hsa-miR-490-5p 0 0 1
chr10:52454586|52454736 hsa-miR-125a-5p 0 1 1
chr10:52454586|52454736 hsa-miR-1233 0 0 1
chr10:52454586|52454736 hsa-miR-125b 0 0 1
chr10:52454586|52454736 hsa-miR-30c 0 0 1
chr10:52454586|52454736 hsa-miR-7 0 0 1
chr10:52454586|52454736 hsa-miR-1300 0 0 1
chr10:52454586|52454736 hsa-miR-206 1 0 0
chr10:52454586|52454736 hsa-miR-1183 1 0 0
chr10:52454586|52454736 hsa-miR-1276 1 0 0
chr10:52454586|52454736 hsa-miR-3132 1 0 0
chr10:52454586|52454736 hsa-miR-3154 1 1 0
chr10:52454586|52454736 hsa-miR-4324 0 1 0
chr10:52454586|52454736 hsa-miR-4270 1 0 0
chr10:52454586|52454736 hsa-miR-4271 1 0 0
chr10:52454586|52454736 hsa-miR-3916 1 0 0
chr10:52454586|52454736 hsa-miR-4428 0 1 0
chr10:52454586|52454736 hsa-miR-4463 1 0 0
chr10:52454586|52454736 hsa-miR-3689e 1 0 0
chr10:52454586|52454736 hsa-miR-4499 1 1 0
chr10:52454586|52454736 hsa-miR-4510 1 1 0
chr10:52454586|52454736 hsa-miR-4534 1 0 0
chr10:52454586|52454736 hsa-miR-4539 1 0 0
chr10:52454586|52454736 hsa-miR-3960 1 0 0
chr10:52454586|52454736 hsa-miR-4654 1 1 0
chr10:52454586|52454736 hsa-miR-4658 1 1 0
chr10:52454586|52454736 hsa-miR-4688 1 1 0
chr10:52454586|52454736 hsa-miR-4689 1 0 0
chr10:52454586|52454736 hsa-miR-4739 1 0 0
chr10:52454586|52454736 hsa-miR-5090 1 0 0
chr10:52454586|52454736 hsa-miR-5093 1 0 0
chr10:52454586|52454736 hsa-miR-6077 1 1 0
chr10:52454586|52454736 hsa-miR-6088 1 0 0
chr10:52454586|52454736 hsa-miR-6090 1 0 0
chr10:52454586|52454736 hsa-miR-6124 1 0 0
chr10:52454586|52454736 hsa-miR-6127 1 0 0
chr10:52454586|52454736 hsa-miR-6129 1 0 0
chr10:52454586|52454736 hsa-miR-6130 1 1 0
chr10:52454586|52454736 hsa-miR-6134 1 0 0
chr10:52454586|52454736 hsa-miR-7976 0 1 0
chr10:52454586|52454736 hsa-miR-8052 1 1 0
chr10:52454586|52454736 hsa-miR-8077 1 0 0
chr10:52454586|52454736 hsa-miR-8082 0 1 0
chr10:52454586|52454736 hsa-miR-8085 1 0 0
chr10:52454586|52454736 hsa-miR-9500 0 1 0
chr10:52454586|52454736 hsa-miR-12118 1 0 0
chr10:52454586|52454736 hsa-miR-6765-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6894-5p 1 1 0
chr10:52454586|52454736 hsa-miR-139-3p 1 1 0
chr10:52454586|52454736 hsa-miR-6515-5p 1 1 0
chr10:52454586|52454736 hsa-miR-6807-5p 1 1 0
chr10:52454586|52454736 hsa-miR-6880-5p 1 0 0
chr10:52454586|52454736 hsa-miR-7847-3p 1 1 0
chr10:52454586|52454736 hsa-miR-4695-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6867-5p 1 0 0
chr10:52454586|52454736 hsa-miR-4709-3p 1 0 0
chr10:52454586|52454736 hsa-miR-6730-5p 1 0 0
chr10:52454586|52454736 hsa-miR-197-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6776-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6793-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6805-5p 1 1 0
chr10:52454586|52454736 hsa-miR-6770-5p 0 1 0
chr10:52454586|52454736 hsa-miR-3194-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6835-5p 1 0 0
chr10:52454586|52454736 hsa-miR-1226-5p 1 0 0
chr10:52454586|52454736 hsa-miR-4786-3p 1 0 0
chr10:52454586|52454736 hsa-miR-4640-5p 1 0 0
chr10:52454586|52454736 hsa-miR-3691-5p 1 0 0
chr10:52454586|52454736 hsa-miR-2681-3p 1 0 0
chr10:52454586|52454736 hsa-miR-937-5p 1 0 0
chr10:52454586|52454736 hsa-miR-3162-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6864-5p 1 0 0
chr10:52454586|52454736 hsa-miR-423-5p 1 1 0
chr10:52454586|52454736 hsa-miR-873-3p 1 1 0
chr10:52454586|52454736 hsa-miR-1304-5p 1 0 0
chr10:52454586|52454736 hsa-miR-483-5p 1 0 0
chr10:52454586|52454736 hsa-miR-18a-5p 0 1 0
chr10:52454586|52454736 hsa-miR-6779-3p 0 1 0
chr10:52454586|52454736 hsa-miR-6743-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6754-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6851-5p 1 0 0
chr10:52454586|52454736 hsa-miR-10401-5p 1 0 0
chr10:52454586|52454736 hsa-miR-11181-3p 1 0 0
chr10:52454586|52454736 hsa-miR-1249-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6797-5p 1 1 0
chr10:52454586|52454736 hsa-miR-5196-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6780b-5p 1 0 0
chr10:52454586|52454736 hsa-miR-10526-3p 1 1 0
chr10:52454586|52454736 hsa-miR-4632-5p 1 0 0
chr10:52454586|52454736 hsa-miR-4725-3p 1 0 0
chr10:52454586|52454736 hsa-miR-4726-5p 1 0 0
chr10:52454586|52454736 hsa-miR-675-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6858-5p 1 1 0
chr10:52454586|52454736 hsa-miR-4723-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6831-5p 1 0 0
chr10:52454586|52454736 hsa-miR-4758-5p 1 0 0
chr10:52454586|52454736 hsa-miR-4769-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6731-5p 1 0 0
chr10:52454586|52454736 hsa-miR-4665-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6876-5p 1 0 0
chr10:52454586|52454736 hsa-miR-4716-3p 1 0 0
chr10:52454586|52454736 hsa-miR-6790-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6849-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6529-5p 1 0 0
chr10:52454586|52454736 hsa-miR-6884-5p 1 1 0
chr10:52454586|52454736 hsa-miR-4676-5p 1 0 0
chr10:52454586|52454736 hsa-miR-3689a-5p 1 0 0
chr10:52454586|52454736 hsa-miR-3689b-5p 1 0 0
chr10:52454586|52454736 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr10:52454586|52454736
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MPLLSLLCWLFLIFQFTMECLRAPSSDFFPFLFTFTSSMISLSLT
Nucleotide Sequence CTGCCCCTTCTCAGTCTCCTTTGCTGGCTCTTCCTCATCTTCCAGTTTACAATGGAGTGTCTCAGGGCTCCGTCTTCAGACTTCTTCCCTTTTCTATTTACATTCACTTCCTCCATGATCTCACTCAGTCTCACG
CircID chr10:52454586|52454736
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MAAPSQSPLLALPHLPVYNGVSQGSVFRLLPFSIYIHFLHDLTQSH
Nucleotide Sequence CTGGCTGCCCCTTCTCAGTCTCCTTTGCTGGCTCTTCCTCATCTTCCAGTTTACAATGGAGTGTCTCAGGGCTCCGTCTTCAGACTTCTTCCCTTTTCTATTTACATTCACTTCCTCCATGATCTCACTCAGTCTCAC
CircID chr10:52454586|52454736
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MSEIMEEVNVNRKGKKSEDGALRHSIVNWKMRKSQQRRLRRGSQ
Nucleotide Sequence CTGAGTGAGATCATGGAGGAAGTGAATGTAAATAGAAAAGGGAAGAAGTCTGAAGACGGAGCCCTGAGACACTCCATTGTAAACTGGAAGATGAGGAAGAGCCAGCAAAGGAGACTGAGAAGGGGCAGCCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab