CircRNA Information

General Information
circRNA Basic Information
CircID chr10:71747872|71748025
Strand +
CircType exon
Host Gene ENSG00000107738.18;
Algorism CIRI2;
Sequence CAGGATGCTGGGAACAAAGGCCTCTTGAAGCCCAGCCACAGCCCAGCTGAGCATGAGGCCCAGCCCATAGACGGCACAGGCCACCTGGCCCATTCCCTGGGCATTCCCTGCTTTGCATTGCTGCTTCTCTTCACCCCATGGAGGCTATGTCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:71747872|71748025 hsa-miR-15a-5p 0 0 1
chr10:71747872|71748025 hsa-miR-15a-3p 0 0 1
chr10:71747872|71748025 hsa-miR-15b-5p 0 0 1
chr10:71747872|71748025 hsa-miR-15b-3p 0 0 1
chr10:71747872|71748025 hsa-miR-195-5p 0 0 1
chr10:71747872|71748025 hsa-miR-195-3p 0 0 1
chr10:71747872|71748025 hsa-miR-375-5p 0 0 1
chr10:71747872|71748025 hsa-miR-375-3p 0 0 1
chr10:71747872|71748025 hsa-miR-335-5p 0 0 1
chr10:71747872|71748025 hsa-miR-335-3p 0 0 1
chr10:71747872|71748025 hsa-miR-424-5p 0 0 1
chr10:71747872|71748025 hsa-miR-424-3p 0 0 1
chr10:71747872|71748025 hsa-miR-497-5p 0 0 1
chr10:71747872|71748025 hsa-miR-497-3p 0 0 1
chr10:71747872|71748025 hsa-miR-527 0 0 1
chr10:71747872|71748025 hsa-miR-608 1 0 1
chr10:71747872|71748025 hsa-miR-330-3p 0 0 1
chr10:71747872|71748025 hsa-miR-1207-3p 0 0 1
chr10:71747872|71748025 hsa-miR-338-3p 0 0 1
chr10:71747872|71748025 hsa-miR-342-5p 0 0 1
chr10:71747872|71748025 hsa-miR-518a-5p 0 0 1
chr10:71747872|71748025 hsa-miR-16 0 0 1
chr10:71747872|71748025 hsa-miR-365 0 0 1
chr10:71747872|71748025 hsa-miR-612 1 0 0
chr10:71747872|71748025 hsa-miR-762 1 0 0
chr10:71747872|71748025 hsa-miR-2861 1 0 0
chr10:71747872|71748025 hsa-miR-3689f 1 0 0
chr10:71747872|71748025 hsa-miR-4505 1 0 0
chr10:71747872|71748025 hsa-miR-4507 1 0 0
chr10:71747872|71748025 hsa-miR-1587 1 0 0
chr10:71747872|71748025 hsa-miR-4651 1 0 0
chr10:71747872|71748025 hsa-miR-4656 1 0 0
chr10:71747872|71748025 hsa-miR-5787 1 0 0
chr10:71747872|71748025 hsa-miR-6081 1 0 0
chr10:71747872|71748025 hsa-miR-6860 1 0 0
chr10:71747872|71748025 hsa-miR-6747-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6890-5p 1 0 0
chr10:71747872|71748025 hsa-miR-4474-3p 1 0 0
chr10:71747872|71748025 hsa-miR-197-5p 1 0 0
chr10:71747872|71748025 hsa-miR-3934-3p 1 0 0
chr10:71747872|71748025 hsa-miR-6786-5p 1 0 0
chr10:71747872|71748025 hsa-miR-4640-5p 1 0 0
chr10:71747872|71748025 hsa-miR-1207-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6812-5p 1 0 0
chr10:71747872|71748025 hsa-miR-5001-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6819-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6722-3p 1 0 0
chr10:71747872|71748025 hsa-miR-3620-5p 1 0 0
chr10:71747872|71748025 hsa-miR-10396b-5p 1 0 0
chr10:71747872|71748025 hsa-miR-4649-5p 1 0 0
chr10:71747872|71748025 hsa-miR-4726-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6848-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6858-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6856-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6855-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6724-5p 1 0 0
chr10:71747872|71748025 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:71747872|71748025
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MKPSHSPAEHEAQPIDGTGHLAHSLGIPCFALLLLFTPWRLCH
Nucleotide Sequence TTGAAGCCCAGCCACAGCCCAGCTGAGCATGAGGCCCAGCCCATAGACGGCACAGGCCACCTGGCCCATTCCCTGGGCATTCCCTGCTTTGCATTGCTGCTTCTCTTCACCCCATGGAGGCTATGTCAC
CircID chr10:71747872|71748025
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MQSRECPGNGPGGLCRLWAGPHAQLGCGWASRGLCSQHP
Nucleotide Sequence ATGCAAAGCAGGGAATGCCCAGGGAATGGGCCAGGTGGCCTGTGCCGTCTATGGGCTGGGCCTCATGCTCAGCTGGGCTGTGGCTGGGCTTCAAGAGGCCTTTGTTCCCAGCATCCT
CircID chr10:71747872|71748025
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MGQVACAVYGLGLMLSWAVAGLQEAFVPSIL
Nucleotide Sequence ATGGGCCAGGTGGCCTGTGCCGTCTATGGGCTGGGCCTCATGCTCAGCTGGGCTGTGGCTGGGCTTCAAGAGGCCTTTGTTCCCAGCATCCTG
CircID chr10:71747872|71748025
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MPREWARWPVPSMGWASCSAGLWLGFKRPLFPAS
Nucleotide Sequence ATGCCCAGGGAATGGGCCAGGTGGCCTGTGCCGTCTATGGGCTGGGCCTCATGCTCAGCTGGGCTGTGGCTGGGCTTCAAGAGGCCTTTGTTCCCAGCATCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab