CircRNA Information

General Information
circRNA Basic Information
CircID chr10:71750806|71751015
Strand -
CircType exon
Host Gene ENSG00000107738.18;
Algorism CIRI2;
Sequence GGGGGAGCCAAGGCGGCCACGGGGGAGAAGTCTCTCCACCGTGCCCTGTGTCTGGTGCCTGGGAGGGTGGCCCAGTGTCCATCTTGTCCCACTGATGCTGCCACATCCCAAGGCTCATGTCTCAGAACGAGAGCTGCTGAAGGGCTGGACGTTCTGAGACTTCTTAAGATGTAAGTCATTTGGCATCTGTAGCTGGTGAATTTCAGGTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:71750806|71751015 hsa-miR-107 0 0 1
chr10:71750806|71751015 hsa-miR-197-5p 0 0 1
chr10:71750806|71751015 hsa-miR-197-3p 0 0 1
chr10:71750806|71751015 hsa-miR-214-5p 0 0 1
chr10:71750806|71751015 hsa-miR-214-3p 0 0 1
chr10:71750806|71751015 hsa-miR-185-5p 0 0 1
chr10:71750806|71751015 hsa-miR-185-3p 0 0 1
chr10:71750806|71751015 hsa-miR-564 0 1 1
chr10:71750806|71751015 hsa-miR-646 0 1 1
chr10:71750806|71751015 hsa-miR-922 0 0 1
chr10:71750806|71751015 hsa-miR-1226-5p 0 0 1
chr10:71750806|71751015 hsa-miR-1226-3p 0 0 1
chr10:71750806|71751015 hsa-miR-1204 0 0 1
chr10:71750806|71751015 hsa-miR-885-3p 0 0 1
chr10:71750806|71751015 hsa-miR-769-3p 0 0 1
chr10:71750806|71751015 hsa-miR-1302 0 0 1
chr10:71750806|71751015 hsa-miR-450b-3p 0 0 1
chr10:71750806|71751015 hsa-miR-103 0 0 1
chr10:71750806|71751015 hsa-miR-220c 0 0 1
chr10:71750806|71751015 hsa-miR-129-3p 0 0 1
chr10:71750806|71751015 hsa-miR-924 0 1 0
chr10:71750806|71751015 hsa-miR-3122 0 1 0
chr10:71750806|71751015 hsa-miR-4298 0 1 0
chr10:71750806|71751015 hsa-miR-4269 0 1 0
chr10:71750806|71751015 hsa-miR-3661 1 0 0
chr10:71750806|71751015 hsa-miR-4654 0 1 0
chr10:71750806|71751015 hsa-miR-4660 0 1 0
chr10:71750806|71751015 hsa-miR-4662b 0 1 0
chr10:71750806|71751015 hsa-miR-5683 0 1 0
chr10:71750806|71751015 hsa-miR-212-5p 0 1 0
chr10:71750806|71751015 hsa-miR-6720-5p 0 1 0
chr10:71750806|71751015 hsa-miR-766-3p 1 0 0
chr10:71750806|71751015 hsa-miR-6728-5p 0 1 0
chr10:71750806|71751015 hsa-miR-593-5p 0 1 0
chr10:71750806|71751015 hsa-miR-6786-5p 1 1 0
chr10:71750806|71751015 hsa-miR-6757-3p 0 1 0
chr10:71750806|71751015 hsa-miR-3189-3p 0 1 0
chr10:71750806|71751015 hsa-miR-6777-3p 0 1 0
chr10:71750806|71751015 hsa-miR-3184-3p 0 1 0
chr10:71750806|71751015 hsa-miR-6775-5p 1 1 0
chr10:71750806|71751015 hsa-miR-6862-5p 1 1 0
chr10:71750806|71751015 hsa-miR-6795-5p 1 0 0
chr10:71750806|71751015 hsa-miR-4758-5p 1 0 0
chr10:71750806|71751015 hsa-miR-9851-3p 0 1 0
chr10:71750806|71751015 hsa-miR-6512-3p 0 1 0
chr10:71750806|71751015 hsa-miR-6864-3p 0 1 0
chr10:71750806|71751015 hsa-miR-6505-3p 0 1 0
chr10:71750806|71751015 hsa-miR-7157-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:71750806|71751015
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MCLVPGRVAQCPSCPTDAATSQGSCLRTRAAEGLDVLRLLKM
Nucleotide Sequence CTGTGTCTGGTGCCTGGGAGGGTGGCCCAGTGTCCATCTTGTCCCACTGATGCTGCCACATCCCAAGGCTCATGTCTCAGAACGAGAGCTGCTGAAGGGCTGGACGTTCTGAGACTTCTTAAGATGTAA
CircID chr10:71750806|71751015
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MGGWPSVHLVPLMLPHPKAHVSERELLKGWTF
Nucleotide Sequence CTGGGAGGGTGGCCCAGTGTCCATCTTGTCCCACTGATGCTGCCACATCCCAAGGCTCATGTCTCAGAACGAGAGCTGCTGAAGGGCTGGACGTTCTGA
CircID chr10:71750806|71751015
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MGCGSISGTRWTLGHPPRHQTQGTVERLLPRGRLGSP
Nucleotide Sequence TTGGGATGTGGCAGCATCAGTGGGACAAGATGGACACTGGGCCACCCTCCCAGGCACCAGACACAGGGCACGGTGGAGAGACTTCTCCCCCGTGGCCGCCTTGGCTCCCCC
CircID chr10:71750806|71751015
ORF Type ORF4
Protein Length 68
Nucleotide Length 204
Protein Sequence MKFTSYRCQMTYILRSLRTSSPSAALVLRHEPWDVAASVGQDGHWATLPGTRHRARWRDFSPVAALAP
Nucleotide Sequence CTGAAATTCACCAGCTACAGATGCCAAATGACTTACATCTTAAGAAGTCTCAGAACGTCCAGCCCTTCAGCAGCTCTCGTTCTGAGACATGAGCCTTGGGATGTGGCAGCATCAGTGGGACAAGATGGACACTGGGCCACCCTCCCAGGCACCAGACACAGGGCACGGTGGAGAGACTTCTCCCCCGTGGCCGCCTTGGCTCCC
CircID chr10:71750806|71751015
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MSLGMWQHQWDKMDTGPPSQAPDTGHGGETSPPWPPWLP
Nucleotide Sequence ATGAGCCTTGGGATGTGGCAGCATCAGTGGGACAAGATGGACACTGGGCCACCCTCCCAGGCACCAGACACAGGGCACGGTGGAGAGACTTCTCCCCCGTGGCCGCCTTGGCTCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab