CircRNA Information

General Information
circRNA Basic Information
CircID chr10:71816821|71817042
Strand -
CircType exon
Host Gene ENSG00000197746.12;
Algorism CIRI2;
Sequence AGTTGAACCAGGGACAGAGAACCCTTGGCCCCACTGATGTCCCAAGCCACCAGCAGCTGCTTCCAAAATCCCTATGCTATTACAGTGGGAATTACATCATTTAAAAAGCCTGATTATTCCAGGCTTCTAATCTTTCATATAAAACTGCCTTTGTTTTGCTGCTTTGTTCAACTGAGAGGCCCAGGAAAGCGGGGAGGGTCCCTGATCAGGGCAGGAGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:71816821|71817042 hsa-miR-15a-5p 0 0 1
chr10:71816821|71817042 hsa-miR-15a-3p 0 0 1
chr10:71816821|71817042 hsa-miR-15b-5p 0 0 1
chr10:71816821|71817042 hsa-miR-15b-3p 0 0 1
chr10:71816821|71817042 hsa-miR-195-5p 0 0 1
chr10:71816821|71817042 hsa-miR-195-3p 0 0 1
chr10:71816821|71817042 hsa-miR-380-5p 0 0 1
chr10:71816821|71817042 hsa-miR-380-3p 0 0 1
chr10:71816821|71817042 hsa-miR-383-5p 0 0 1
chr10:71816821|71817042 hsa-miR-383-3p 0 0 1
chr10:71816821|71817042 hsa-miR-424-5p 0 0 1
chr10:71816821|71817042 hsa-miR-424-3p 0 0 1
chr10:71816821|71817042 hsa-miR-484 0 0 1
chr10:71816821|71817042 hsa-miR-497-5p 0 0 1
chr10:71816821|71817042 hsa-miR-497-3p 0 0 1
chr10:71816821|71817042 hsa-miR-545-5p 0 0 1
chr10:71816821|71817042 hsa-miR-545-3p 0 0 1
chr10:71816821|71817042 hsa-miR-646 0 1 1
chr10:71816821|71817042 hsa-miR-874-5p 0 0 1
chr10:71816821|71817042 hsa-miR-874-3p 0 0 1
chr10:71816821|71817042 hsa-miR-1290 0 0 1
chr10:71816821|71817042 hsa-miR-548p 0 0 1
chr10:71816821|71817042 hsa-miR-671-5p 1 0 1
chr10:71816821|71817042 hsa-miR-146b-3p 0 0 1
chr10:71816821|71817042 hsa-miR-330-3p 0 0 1
chr10:71816821|71817042 hsa-miR-188-3p 0 0 1
chr10:71816821|71817042 hsa-miR-1302 0 1 1
chr10:71816821|71817042 hsa-miR-1260 0 0 1
chr10:71816821|71817042 hsa-miR-16 0 0 1
chr10:71816821|71817042 hsa-miR-138 0 0 1
chr10:71816821|71817042 hsa-miR-1254 0 0 1
chr10:71816821|71817042 hsa-miR-1259 0 0 1
chr10:71816821|71817042 hsa-miR-650 1 0 0
chr10:71816821|71817042 hsa-miR-658 1 0 0
chr10:71816821|71817042 hsa-miR-1538 1 0 0
chr10:71816821|71817042 hsa-miR-1976 0 1 0
chr10:71816821|71817042 hsa-miR-2861 1 0 0
chr10:71816821|71817042 hsa-miR-3122 0 1 0
chr10:71816821|71817042 hsa-miR-3665 1 0 0
chr10:71816821|71817042 hsa-miR-4450 1 1 0
chr10:71816821|71817042 hsa-miR-4456 0 1 0
chr10:71816821|71817042 hsa-miR-4484 1 0 0
chr10:71816821|71817042 hsa-miR-3960 1 0 0
chr10:71816821|71817042 hsa-miR-4660 1 0 0
chr10:71816821|71817042 hsa-miR-5047 1 0 0
chr10:71816821|71817042 hsa-miR-5194 1 0 0
chr10:71816821|71817042 hsa-miR-6079 0 1 0
chr10:71816821|71817042 hsa-miR-6081 1 0 0
chr10:71816821|71817042 hsa-miR-8075 1 0 0
chr10:71816821|71817042 hsa-miR-138-5p 1 1 0
chr10:71816821|71817042 hsa-miR-135a-3p 1 1 0
chr10:71816821|71817042 hsa-miR-6749-3p 1 0 0
chr10:71816821|71817042 hsa-miR-18a-3p 0 1 0
chr10:71816821|71817042 hsa-miR-6857-5p 1 0 0
chr10:71816821|71817042 hsa-miR-3692-5p 0 1 0
chr10:71816821|71817042 hsa-miR-1227-5p 0 1 0
chr10:71816821|71817042 hsa-miR-6757-5p 1 0 0
chr10:71816821|71817042 hsa-miR-4695-5p 1 0 0
chr10:71816821|71817042 hsa-miR-1301-3p 1 0 0
chr10:71816821|71817042 hsa-miR-3151-5p 0 1 0
chr10:71816821|71817042 hsa-miR-6798-5p 1 0 0
chr10:71816821|71817042 hsa-miR-1343-3p 0 1 0
chr10:71816821|71817042 hsa-miR-6786-5p 1 1 0
chr10:71816821|71817042 hsa-miR-939-3p 1 1 0
chr10:71816821|71817042 hsa-miR-193b-5p 1 0 0
chr10:71816821|71817042 hsa-miR-885-3p 1 0 0
chr10:71816821|71817042 hsa-miR-7113-3p 1 0 0
chr10:71816821|71817042 hsa-miR-659-5p 1 0 0
chr10:71816821|71817042 hsa-miR-3162-5p 1 0 0
chr10:71816821|71817042 hsa-miR-194-3p 0 1 0
chr10:71816821|71817042 hsa-miR-6866-5p 0 1 0
chr10:71816821|71817042 hsa-miR-660-3p 0 1 0
chr10:71816821|71817042 hsa-miR-597-3p 0 1 0
chr10:71816821|71817042 hsa-miR-5088-3p 1 0 0
chr10:71816821|71817042 hsa-miR-328-3p 1 0 0
chr10:71816821|71817042 hsa-miR-6893-5p 1 0 0
chr10:71816821|71817042 hsa-miR-6775-5p 1 0 0
chr10:71816821|71817042 hsa-miR-1249-5p 1 0 0
chr10:71816821|71817042 hsa-miR-6879-5p 1 0 0
chr10:71816821|71817042 hsa-miR-5189-5p 1 0 0
chr10:71816821|71817042 hsa-miR-365a-5p 1 0 0
chr10:71816821|71817042 hsa-miR-365b-5p 1 0 0
chr10:71816821|71817042 hsa-miR-6511b-5p 1 0 0
chr10:71816821|71817042 hsa-miR-6855-5p 1 0 0
chr10:71816821|71817042 hsa-miR-3116 0 1 0
chr10:71816821|71817042 hsa-miR-6762-5p 0 1 0
chr10:71816821|71817042 hsa-miR-6829-3p 0 1 0
chr10:71816821|71817042 hsa-miR-10400-3p 1 0 0
chr10:71816821|71817042 hsa-miR-6783-3p 1 1 0
chr10:71816821|71817042 hsa-miR-6838-5p 0 1 0
chr10:71816821|71817042 hsa-miR-6843-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:71816821|71817042
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence MAPLMSQATSSCFQNPYAITVGITSFKKPDYSRLLIFHIKLPLFCCFVQLRGPGKRGGSLIRAGGH
Nucleotide Sequence TTGGCCCCACTGATGTCCCAAGCCACCAGCAGCTGCTTCCAAAATCCCTATGCTATTACAGTGGGAATTACATCATTTAAAAAGCCTGATTATTCCAGGCTTCTAATCTTTCATATAAAACTGCCTTTGTTTTGCTGCTTTGTTCAACTGAGAGGCCCAGGAAAGCGGGGAGGGTCCCTGATCAGGGCAGGAGGCCAC
CircID chr10:71816821|71817042
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence LNQGQRTLGPTDVPSHQQLLPKSLCYYSGNYII
Nucleotide Sequence TTGAACCAGGGACAGAGAACCCTTGGCCCCACTGATGTCCCAAGCCACCAGCAGCTGCTTCCAAAATCCCTATGCTATTACAGTGGGAATTACATCATTTAA
CircID chr10:71816821|71817042
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MGLSVEQSSKTKAVLYERLEAWNNQAF
Nucleotide Sequence CTGGGCCTCTCAGTTGAACAAAGCAGCAAAACAAAGGCAGTTTTATATGAAAGATTAGAAGCCTGGAATAATCAGGCTTTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab