CircRNA Information

General Information
circRNA Basic Information
CircID chr10:71817174|71817411
Strand +
CircType exon
Host Gene ENSG00000197746.12;
Algorism CIRI2;
Sequence CACAGCATTGGTTTTTTTCTACTTGTGTGTCTGGGGGAATGAACGCACAGATCTGTTTGACTTTGTTATAAAAATAGGGCTCCCCCACCTCCCCCATTTCTGTGTCCTTTATTGTAGCATTGCTGTCTGCAAGGGAGCCCCTAGCCCCTGGCAGACATAGCTGCTTCAGTGCCCCTTTTCTCTCTGCTAGATGGATGTTGATGCACTGGAGGTCTTTTAGCCTGCCCTTGCATGGCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:71817174|71817411 hsa-miR-148a-5p 0 0 1
chr10:71817174|71817411 hsa-miR-148a-3p 0 0 1
chr10:71817174|71817411 hsa-miR-210-5p 0 0 1
chr10:71817174|71817411 hsa-miR-210-3p 0 0 1
chr10:71817174|71817411 hsa-miR-221-5p 0 0 1
chr10:71817174|71817411 hsa-miR-221-3p 0 0 1
chr10:71817174|71817411 hsa-miR-222-5p 0 0 1
chr10:71817174|71817411 hsa-miR-222-3p 0 0 1
chr10:71817174|71817411 hsa-miR-152-5p 0 0 1
chr10:71817174|71817411 hsa-miR-152-3p 0 0 1
chr10:71817174|71817411 hsa-miR-148b-5p 0 0 1
chr10:71817174|71817411 hsa-miR-148b-3p 0 0 1
chr10:71817174|71817411 hsa-miR-346 0 0 1
chr10:71817174|71817411 hsa-miR-495-5p 0 0 1
chr10:71817174|71817411 hsa-miR-495-3p 0 0 1
chr10:71817174|71817411 hsa-miR-623 0 0 1
chr10:71817174|71817411 hsa-miR-625-5p 0 0 1
chr10:71817174|71817411 hsa-miR-625-3p 0 0 1
chr10:71817174|71817411 hsa-miR-632 0 0 1
chr10:71817174|71817411 hsa-miR-646 0 0 1
chr10:71817174|71817411 hsa-miR-1298-5p 0 0 1
chr10:71817174|71817411 hsa-miR-1298-3p 0 0 1
chr10:71817174|71817411 hsa-miR-939-5p 0 0 1
chr10:71817174|71817411 hsa-miR-939-3p 0 0 1
chr10:71817174|71817411 hsa-miR-1275 0 0 1
chr10:71817174|71817411 hsa-miR-1197 0 0 1
chr10:71817174|71817411 hsa-miR-1324 0 0 1
chr10:71817174|71817411 hsa-miR-1825 0 0 1
chr10:71817174|71817411 hsa-miR-199a-5p 0 0 1
chr10:71817174|71817411 hsa-miR-361-3p 0 0 1
chr10:71817174|71817411 hsa-miR-654-3p 0 0 1
chr10:71817174|71817411 hsa-miR-338-5p 0 0 1
chr10:71817174|71817411 hsa-miR-199b-5p 0 0 1
chr10:71817174|71817411 hsa-miR-548d-3p 0 0 1
chr10:71817174|71817411 hsa-miR-1233 0 0 1
chr10:71817174|71817411 hsa-miR-4462 1 0 0
chr10:71817174|71817411 hsa-miR-4465 1 0 0
chr10:71817174|71817411 hsa-miR-5698 1 0 0
chr10:71817174|71817411 hsa-miR-7706 1 0 0
chr10:71817174|71817411 hsa-miR-6825-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6746-5p 1 0 0
chr10:71817174|71817411 hsa-miR-4709-3p 1 0 0
chr10:71817174|71817411 hsa-miR-7845-5p 1 0 0
chr10:71817174|71817411 hsa-miR-185-3p 1 0 0
chr10:71817174|71817411 hsa-miR-6827-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6782-5p 1 0 0
chr10:71817174|71817411 hsa-miR-5006-5p 1 0 0
chr10:71817174|71817411 hsa-miR-5088-5p 1 0 0
chr10:71817174|71817411 hsa-miR-149-3p 1 0 0
chr10:71817174|71817411 hsa-miR-6824-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6868-5p 1 0 0
chr10:71817174|71817411 hsa-miR-4763-3p 1 0 0
chr10:71817174|71817411 hsa-miR-6870-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6769a-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6803-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6851-5p 1 0 0
chr10:71817174|71817411 hsa-miR-7110-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6722-3p 1 0 0
chr10:71817174|71817411 hsa-miR-7111-5p 1 0 0
chr10:71817174|71817411 hsa-miR-642b-3p 1 0 0
chr10:71817174|71817411 hsa-miR-4649-5p 1 0 0
chr10:71817174|71817411 hsa-miR-4723-5p 1 0 0
chr10:71817174|71817411 hsa-miR-6856-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr10:71817174|71817411
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MVFFYLCVWGNERTDLFDFVIKIGLPHLPHFCVLYCSIAVCKGAPSPWQT
Nucleotide Sequence TTGGTTTTTTTCTACTTGTGTGTCTGGGGGAATGAACGCACAGATCTGTTTGACTTTGTTATAAAAATAGGGCTCCCCCACCTCCCCCATTTCTGTGTCCTTTATTGTAGCATTGCTGTCTGCAAGGGAGCCCCTAGCCCCTGGCAGACATAG

CircID chr10:71817174|71817411
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MLSAREPLAPGRHSCFSAPFLSARWMLMHWRSFSLPLHG
Nucleotide Sequence TTGCTGTCTGCAAGGGAGCCCCTAGCCCCTGGCAGACATAGCTGCTTCAGTGCCCCTTTTCTCTCTGCTAGATGGATGTTGATGCACTGGAGGTCTTTTAGCCTGCCCTTGCATGGC

CircID chr10:71817174|71817411
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MKQLCLPGARGSLADSNATIKDTEMGEVGEPYFYNKVKQICAFIPPDTQVEKNQCC
Nucleotide Sequence CTGAAGCAGCTATGTCTGCCAGGGGCTAGGGGCTCCCTTGCAGACAGCAATGCTACAATAAAGGACACAGAAATGGGGGAGGTGGGGGAGCCCTATTTTTATAACAAAGTCAAACAGATCTGTGCGTTCATTCCCCCAGACACACAAGTAGAAAAAAACCAATGCTGT

CircID chr10:71817174|71817411
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MQGQAKRPPVHQHPSSREKRGTEAAMSARG
Nucleotide Sequence ATGCAAGGGCAGGCTAAAAGACCTCCAGTGCATCAACATCCATCTAGCAGAGAGAAAAGGGGCACTGAAGCAGCTATGTCTGCCAGGGGCTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites