CircRNA Information

General Information
circRNA Basic Information
CircID chr10:72012619|72012792
Strand +
CircType exon
Host Gene ENSG00000122863.5;
Algorism CIRI2;
Sequence CCTCTCCCTTCCATCTGGCTGCGCCTTGTCCTAGAAGCTTCACAAGCAAACCCACCAACTCAGGAGCCCTGGATTTCAGCAGATGGTCCTTCTATCAGCTTGTACAGATCAATAAGACACACTTGGCTTGTGCAGGCATCTGCTTCCACTCAGCCCCAATTTCTCTCCCCTTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:72012619|72012792 hsa-miR-185-5p 0 0 1
chr10:72012619|72012792 hsa-miR-185-3p 0 0 1
chr10:72012619|72012792 hsa-miR-539-5p 0 0 1
chr10:72012619|72012792 hsa-miR-539-3p 0 0 1
chr10:72012619|72012792 hsa-miR-571 0 0 1
chr10:72012619|72012792 hsa-miR-595 0 0 1
chr10:72012619|72012792 hsa-miR-629-5p 0 0 1
chr10:72012619|72012792 hsa-miR-629-3p 0 0 1
chr10:72012619|72012792 hsa-miR-541-5p 0 0 1
chr10:72012619|72012792 hsa-miR-541-3p 0 0 1
chr10:72012619|72012792 hsa-miR-1200 0 0 1
chr10:72012619|72012792 hsa-miR-1197 0 0 1
chr10:72012619|72012792 hsa-miR-127-5p 0 0 1
chr10:72012619|72012792 hsa-miR-671-5p 0 0 1
chr10:72012619|72012792 hsa-miR-654-5p 0 0 1
chr10:72012619|72012792 hsa-miR-524-3p 0 0 1
chr10:72012619|72012792 hsa-miR-525-3p 0 0 1
chr10:72012619|72012792 hsa-miR-219-1-3p 0 0 1
chr10:72012619|72012792 hsa-miR-658 1 0 0
chr10:72012619|72012792 hsa-miR-765 1 0 0
chr10:72012619|72012792 hsa-miR-1275 1 0 0
chr10:72012619|72012792 hsa-miR-3132 1 0 0
chr10:72012619|72012792 hsa-miR-3175 1 0 0
chr10:72012619|72012792 hsa-miR-3197 1 0 0
chr10:72012619|72012792 hsa-miR-4298 1 0 0
chr10:72012619|72012792 hsa-miR-4306 1 0 0
chr10:72012619|72012792 hsa-miR-4271 1 0 0
chr10:72012619|72012792 hsa-miR-3936 1 0 0
chr10:72012619|72012792 hsa-miR-4644 1 0 0
chr10:72012619|72012792 hsa-miR-4651 1 0 0
chr10:72012619|72012792 hsa-miR-4656 1 0 0
chr10:72012619|72012792 hsa-miR-4688 1 0 0
chr10:72012619|72012792 hsa-miR-4689 1 0 0
chr10:72012619|72012792 hsa-miR-4706 1 0 0
chr10:72012619|72012792 hsa-miR-4721 1 0 0
chr10:72012619|72012792 hsa-miR-4739 1 0 0
chr10:72012619|72012792 hsa-miR-4779 1 0 0
chr10:72012619|72012792 hsa-miR-5192 1 0 0
chr10:72012619|72012792 hsa-miR-5572 1 0 0
chr10:72012619|72012792 hsa-miR-5698 1 0 0
chr10:72012619|72012792 hsa-miR-5739 1 0 0
chr10:72012619|72012792 hsa-miR-6085 1 0 0
chr10:72012619|72012792 hsa-miR-6090 1 0 0
chr10:72012619|72012792 hsa-miR-6124 1 0 0
chr10:72012619|72012792 hsa-miR-8085 1 0 0
chr10:72012619|72012792 hsa-miR-12115 1 0 0
chr10:72012619|72012792 hsa-miR-6734-5p 1 0 0
chr10:72012619|72012792 hsa-miR-3150a-3p 1 0 0
chr10:72012619|72012792 hsa-miR-6861-5p 1 0 0
chr10:72012619|72012792 hsa-miR-7106-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6825-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6873-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6746-5p 1 0 0
chr10:72012619|72012792 hsa-miR-197-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6793-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6829-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6732-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6805-5p 1 0 0
chr10:72012619|72012792 hsa-miR-23a-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6798-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6760-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6835-5p 1 0 0
chr10:72012619|72012792 hsa-miR-5088-5p 1 0 0
chr10:72012619|72012792 hsa-miR-7109-5p 1 0 0
chr10:72012619|72012792 hsa-miR-1226-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6784-5p 1 0 0
chr10:72012619|72012792 hsa-miR-4640-5p 1 0 0
chr10:72012619|72012792 hsa-miR-3127-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6823-5p 1 0 0
chr10:72012619|72012792 hsa-miR-149-3p 1 0 0
chr10:72012619|72012792 hsa-miR-6824-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6802-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6878-5p 1 0 0
chr10:72012619|72012792 hsa-miR-7850-5p 1 0 0
chr10:72012619|72012792 hsa-miR-1207-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6769b-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6816-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6870-5p 1 0 0
chr10:72012619|72012792 hsa-miR-1343-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6743-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6769a-5p 1 0 0
chr10:72012619|72012792 hsa-miR-1249-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6751-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6779-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6780a-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6788-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6797-5p 1 0 0
chr10:72012619|72012792 hsa-miR-7111-5p 1 0 0
chr10:72012619|72012792 hsa-miR-1915-3p 1 0 0
chr10:72012619|72012792 hsa-miR-4728-5p 1 0 0
chr10:72012619|72012792 hsa-miR-5196-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6780b-5p 1 0 0
chr10:72012619|72012792 hsa-miR-10396a-5p 1 0 0
chr10:72012619|72012792 hsa-miR-10526-3p 1 0 0
chr10:72012619|72012792 hsa-miR-4685-5p 1 0 0
chr10:72012619|72012792 hsa-miR-4725-3p 1 0 0
chr10:72012619|72012792 hsa-miR-6735-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6794-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6795-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6846-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6883-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6887-5p 1 0 0
chr10:72012619|72012792 hsa-miR-4723-5p 1 0 0
chr10:72012619|72012792 hsa-miR-939-5p 1 0 0
chr10:72012619|72012792 hsa-miR-30c-1-3p 1 0 0
chr10:72012619|72012792 hsa-miR-6731-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6856-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6891-5p 1 0 0
chr10:72012619|72012792 hsa-miR-4716-3p 1 0 0
chr10:72012619|72012792 hsa-miR-6766-5p 1 0 0
chr10:72012619|72012792 hsa-miR-6785-5p 1 0 0
chr10:72012619|72012792 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr10:72012619|72012792
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MRLVLEASQANPPTQEPWISADGPSISLYRSIRHTWLVQASASTQPQFLSP
Nucleotide Sequence CTGCGCCTTGTCCTAGAAGCTTCACAAGCAAACCCACCAACTCAGGAGCCCTGGATTTCAGCAGATGGTCCTTCTATCAGCTTGTACAGATCAATAAGACACACTTGGCTTGTGCAGGCATCTGCTTCCACTCAGCCCCAATTTCTCTCCCCTTAG
CircID chr10:72012619|72012792
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MAAPCPRSFTSKPTNSGALDFSRWSFYQLVQINKTHLACAGICFHSAPISLPL
Nucleotide Sequence CTGGCTGCGCCTTGTCCTAGAAGCTTCACAAGCAAACCCACCAACTCAGGAGCCCTGGATTTCAGCAGATGGTCCTTCTATCAGCTTGTACAGATCAATAAGACACACTTGGCTTGTGCAGGCATCTGCTTCCACTCAGCCCCAATTTCTCTCCCCTTA
CircID chr10:72012619|72012792
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MLKSRAPELVGLLVKLLGQGAARWKGE
Nucleotide Sequence CTGCTGAAATCCAGGGCTCCTGAGTTGGTGGGTTTGCTTGTGAAGCTTCTAGGACAAGGCGCAGCCAGATGGAAGGGAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab