CircRNA Information

General Information
circRNA Basic Information
CircID chr10:72275320|72275447
Strand +
CircType exon
Host Gene ENSG00000168209.4;
Algorism CIRI2;
Sequence ATCCAGCTGGAAGCCTTGTTGGCCCCTAAGCCTTTGTTTCATGCTACAGTACTGAGGGGTATGTGTCCCCAATGCACAGCCACCCGCACACAACTCAATGAGCTTCCTGGGAAACACTATTCCCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:72275320|72275447 hsa-miR-33a-5p 0 0 1
chr10:72275320|72275447 hsa-miR-33a-3p 0 0 1
chr10:72275320|72275447 hsa-miR-494-5p 0 0 1
chr10:72275320|72275447 hsa-miR-494-3p 0 0 1
chr10:72275320|72275447 hsa-miR-571 0 0 1
chr10:72275320|72275447 hsa-miR-625-5p 0 0 1
chr10:72275320|72275447 hsa-miR-625-3p 0 0 1
chr10:72275320|72275447 hsa-miR-33b-5p 0 0 1
chr10:72275320|72275447 hsa-miR-33b-3p 0 0 1
chr10:72275320|72275447 hsa-miR-147b-5p 0 0 1
chr10:72275320|72275447 hsa-miR-147b-3p 0 0 1
chr10:72275320|72275447 hsa-miR-1183 1 1 1
chr10:72275320|72275447 hsa-miR-1287-5p 0 0 1
chr10:72275320|72275447 hsa-miR-1287-3p 0 0 1
chr10:72275320|72275447 hsa-miR-1275 0 0 1
chr10:72275320|72275447 hsa-miR-1278 0 1 1
chr10:72275320|72275447 hsa-miR-1207-3p 0 0 1
chr10:72275320|72275447 hsa-miR-886-3p 0 0 1
chr10:72275320|72275447 hsa-miR-147 0 0 1
chr10:72275320|72275447 hsa-miR-219-1-3p 0 0 1
chr10:72275320|72275447 hsa-miR-637 1 0 0
chr10:72275320|72275447 hsa-miR-3137 1 1 0
chr10:72275320|72275447 hsa-miR-3937 1 0 0
chr10:72275320|72275447 hsa-miR-4466 1 0 0
chr10:72275320|72275447 hsa-miR-8060 0 1 0
chr10:72275320|72275447 hsa-miR-6840-3p 1 0 0
chr10:72275320|72275447 hsa-miR-671-5p 1 0 0
chr10:72275320|72275447 hsa-miR-6759-5p 1 0 0
chr10:72275320|72275447 hsa-miR-3180-3p 1 0 0
chr10:72275320|72275447 hsa-miR-6810-5p 0 1 0
chr10:72275320|72275447 hsa-miR-4640-5p 1 0 0
chr10:72275320|72275447 hsa-miR-1228-5p 1 0 0
chr10:72275320|72275447 hsa-miR-6877-5p 1 0 0
chr10:72275320|72275447 hsa-miR-450a-2-3p 0 1 0
chr10:72275320|72275447 hsa-miR-5571-3p 1 1 0
chr10:72275320|72275447 hsa-miR-20b-3p 1 0 0
chr10:72275320|72275447 hsa-miR-4797-3p 0 1 0
chr10:72275320|72275447 hsa-miR-1233-5p 1 0 0
chr10:72275320|72275447 hsa-miR-6769b-5p 1 0 0
chr10:72275320|72275447 hsa-miR-3180 1 0 0
chr10:72275320|72275447 hsa-miR-6726-5p 1 0 0
chr10:72275320|72275447 hsa-miR-6752-5p 1 0 0
chr10:72275320|72275447 hsa-miR-6756-5p 1 0 0
chr10:72275320|72275447 hsa-miR-6803-5p 1 0 0
chr10:72275320|72275447 hsa-miR-6813-5p 1 0 0
chr10:72275320|72275447 hsa-miR-10401-5p 1 0 0
chr10:72275320|72275447 hsa-miR-328-5p 1 0 0
chr10:72275320|72275447 hsa-miR-1266-5p 1 0 0
chr10:72275320|72275447 hsa-miR-4472 0 1 0
chr10:72275320|72275447 hsa-miR-6764-5p 1 0 0
chr10:72275320|72275447 hsa-miR-142-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr10:72275320|72275447
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MEALLAPKPLFHATVLRGMCPQCTATRTQLNELPGKHYSP
Nucleotide Sequence CTGGAAGCCTTGTTGGCCCCTAAGCCTTTGTTTCATGCTACAGTACTGAGGGGTATGTGTCCCCAATGCACAGCCACCCGCACACAACTCAATGAGCTTCCTGGGAAACACTATTCCCCC

CircID chr10:72275320|72275447
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MCAGGCALGTHTPQYCSMKQRLRGQQGFQLD
Nucleotide Sequence TTGTGTGCGGGTGGCTGTGCATTGGGGACACATACCCCTCAGTACTGTAGCATGAAACAAAGGCTTAGGGGCCAACAAGGCTTCCAGCTGGAT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites