CircRNA Information

General Information
circRNA Basic Information
CircID chr10:72340794|72341127
Strand -
CircType exon
Host Gene ENSG00000148719.13;
Algorism CIRI2;
Sequence CCTGGTTGTCCCTGCGGTCCTGCCTTTGCTGGTAGGTATAGCGCATGCGGCCGTTGCTGTAGACGTGGACGTTACCTGGGGGTCAGAGGGGCTGAGTCAGGAGCCAGGTCTGTTGGGAAAGGGAGAGGCTGGCATGCCATTCCCACCATCACCCCAGGGATACCTGGCTGTGGGGAGGGTGGGGAACTTACTAGAAGGGAAGCCGCCGCCAAAGAACATGTTGAAGAGGTCTTCAGGGGAGATGTCGGCCTCAAAGCCACGGTGGAAATCCCCATGCCCATGGCCGTGCCGGGCCGCCTGGCTCTTGTCATCGCCGAACTGGTCATACTGCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:72340794|72341127 hsa-miR-204-5p 0 0 1
chr10:72340794|72341127 hsa-miR-204-3p 0 0 1
chr10:72340794|72341127 hsa-miR-211-5p 0 0 1
chr10:72340794|72341127 hsa-miR-211-3p 0 0 1
chr10:72340794|72341127 hsa-miR-149-5p 0 0 1
chr10:72340794|72341127 hsa-miR-149-3p 0 0 1
chr10:72340794|72341127 hsa-miR-335-5p 0 0 1
chr10:72340794|72341127 hsa-miR-335-3p 0 0 1
chr10:72340794|72341127 hsa-miR-325 0 0 1
chr10:72340794|72341127 hsa-miR-345-5p 0 0 1
chr10:72340794|72341127 hsa-miR-345-3p 0 0 1
chr10:72340794|72341127 hsa-miR-545-5p 0 0 1
chr10:72340794|72341127 hsa-miR-545-3p 0 0 1
chr10:72340794|72341127 hsa-miR-564 0 0 1
chr10:72340794|72341127 hsa-miR-608 0 0 1
chr10:72340794|72341127 hsa-miR-623 0 0 1
chr10:72340794|72341127 hsa-miR-631 1 0 1
chr10:72340794|72341127 hsa-miR-634 0 0 1
chr10:72340794|72341127 hsa-miR-421 0 0 1
chr10:72340794|72341127 hsa-miR-541-5p 0 0 1
chr10:72340794|72341127 hsa-miR-541-3p 0 0 1
chr10:72340794|72341127 hsa-miR-940 0 0 1
chr10:72340794|72341127 hsa-miR-1202 0 0 1
chr10:72340794|72341127 hsa-miR-1286 0 0 1
chr10:72340794|72341127 hsa-miR-1304-5p 0 0 1
chr10:72340794|72341127 hsa-miR-1304-3p 0 0 1
chr10:72340794|72341127 hsa-miR-139-5p 0 0 1
chr10:72340794|72341127 hsa-miR-512-5p 0 0 1
chr10:72340794|72341127 hsa-miR-654-5p 0 0 1
chr10:72340794|72341127 hsa-miR-361-3p 0 0 1
chr10:72340794|72341127 hsa-miR-628-3p 0 0 1
chr10:72340794|72341127 hsa-miR-875-5p 0 0 1
chr10:72340794|72341127 hsa-miR-331-3p 0 0 1
chr10:72340794|72341127 hsa-miR-188-5p 0 0 1
chr10:72340794|72341127 hsa-miR-342-5p 0 0 1
chr10:72340794|72341127 hsa-miR-876-5p 0 0 1
chr10:72340794|72341127 hsa-miR-9 0 0 1
chr10:72340794|72341127 hsa-miR-484 1 0 0
chr10:72340794|72341127 hsa-miR-760 1 0 0
chr10:72340794|72341127 hsa-miR-663b 1 0 0
chr10:72340794|72341127 hsa-miR-3196 1 0 0
chr10:72340794|72341127 hsa-miR-4304 1 0 0
chr10:72340794|72341127 hsa-miR-4321 1 0 0
chr10:72340794|72341127 hsa-miR-3937 1 0 0
chr10:72340794|72341127 hsa-miR-1268b 1 0 0
chr10:72340794|72341127 hsa-miR-4467 1 0 0
chr10:72340794|72341127 hsa-miR-4488 1 0 0
chr10:72340794|72341127 hsa-miR-4497 1 0 0
chr10:72340794|72341127 hsa-miR-3960 1 0 0
chr10:72340794|72341127 hsa-miR-3972 1 0 0
chr10:72340794|72341127 hsa-miR-4634 1 0 0
chr10:72340794|72341127 hsa-miR-4730 1 0 0
chr10:72340794|72341127 hsa-miR-135a-3p 1 0 0
chr10:72340794|72341127 hsa-miR-4665-3p 1 0 0
chr10:72340794|72341127 hsa-miR-4726-3p 1 0 0
chr10:72340794|72341127 hsa-miR-1225-3p 1 0 0
chr10:72340794|72341127 hsa-miR-6762-3p 1 0 0
chr10:72340794|72341127 hsa-miR-6845-3p 1 0 0
chr10:72340794|72341127 hsa-miR-6858-3p 1 0 0
chr10:72340794|72341127 hsa-miR-6772-3p 1 0 0
chr10:72340794|72341127 hsa-miR-7113-3p 1 0 0
chr10:72340794|72341127 hsa-miR-3191-5p 1 0 0
chr10:72340794|72341127 hsa-miR-6741-3p 1 0 0
chr10:72340794|72341127 hsa-miR-4749-3p 1 0 0
chr10:72340794|72341127 hsa-miR-6770-3p 1 0 0
chr10:72340794|72341127 hsa-miR-4649-3p 1 0 0
chr10:72340794|72341127 hsa-miR-6857-3p 1 0 0
chr10:72340794|72341127 hsa-miR-4750-3p 1 0 0
chr10:72340794|72341127 hsa-miR-10400-5p 1 0 0
chr10:72340794|72341127 hsa-miR-6787-5p 1 0 0
chr10:72340794|72341127 hsa-miR-6803-5p 1 0 0
chr10:72340794|72341127 hsa-miR-6842-5p 1 0 0
chr10:72340794|72341127 hsa-miR-6851-5p 1 0 0
chr10:72340794|72341127 hsa-miR-4685-3p 1 0 0
chr10:72340794|72341127 hsa-miR-4755-5p 1 0 0
chr10:72340794|72341127 hsa-miR-6836-5p 1 0 0
chr10:72340794|72341127 hsa-miR-449c-5p 1 0 0
chr10:72340794|72341127 hsa-miR-6877-3p 1 0 0
chr10:72340794|72341127 hsa-miR-4722-3p 1 0 0
chr10:72340794|72341127 hsa-miR-10392-3p 1 0 0
chr10:72340794|72341127 hsa-miR-125a-5p 1 0 0
chr10:72340794|72341127 hsa-miR-4723-3p 1 0 0
chr10:72340794|72341127 hsa-miR-3085-3p 1 0 0
chr10:72340794|72341127 hsa-miR-5006-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:72340794|72341127
ORF Type ORF1
Protein Length 86
Nucleotide Length 258
Protein Sequence MGVRGAESGARSVGKGRGWHAIPTITPGIPGCGEGGELTRREAAAKEHVEEVFRGDVGLKATVEIPMPMAVPGRLALVIAELVILL
Nucleotide Sequence CTGGGGGTCAGAGGGGCTGAGTCAGGAGCCAGGTCTGTTGGGAAAGGGAGAGGCTGGCATGCCATTCCCACCATCACCCCAGGGATACCTGGCTGTGGGGAGGGTGGGGAACTTACTAGAAGGGAAGCCGCCGCCAAAGAACATGTTGAAGAGGTCTTCAGGGGAGATGTCGGCCTCAAAGCCACGGTGGAAATCCCCATGCCCATGGCCGTGCCGGGCCGCCTGGCTCTTGTCATCGCCGAACTGGTCATACTGCTT
CircID chr10:72340794|72341127
ORF Type ORF2
Protein Length 111
Nucleotide Length 333
Protein Sequence LVVPAVLPLLVGIAHAAVAVDVDVTWGSEGLSQEPGLLGKGEAGMPFPPSPQGYLAVGRVGNLLEGKPPPKNMLKRSSGEMSASKPRWKSPCPWPCRAAWLLSSPNWSYCF
Nucleotide Sequence CTGGTTGTCCCTGCGGTCCTGCCTTTGCTGGTAGGTATAGCGCATGCGGCCGTTGCTGTAGACGTGGACGTTACCTGGGGGTCAGAGGGGCTGAGTCAGGAGCCAGGTCTGTTGGGAAAGGGAGAGGCTGGCATGCCATTCCCACCATCACCCCAGGGATACCTGGCTGTGGGGAGGGTGGGGAACTTACTAGAAGGGAAGCCGCCGCCAAAGAACATGTTGAAGAGGTCTTCAGGGGAGATGTCGGCCTCAAAGCCACGGTGGAAATCCCCATGCCCATGGCCGTGCCGGGCCGCCTGGCTCTTGTCATCGCCGAACTGGTCATACTGCTTC
CircID chr10:72340794|72341127
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MFFGGGFPSSKFPTLPTARYPWGDGGNGMPASPFPNRPGS
Nucleotide Sequence ATGTTCTTTGGCGGCGGCTTCCCTTCTAGTAAGTTCCCCACCCTCCCCACAGCCAGGTATCCCTGGGGTGATGGTGGGAATGGCATGCCAGCCTCTCCCTTTCCCAACAGACCTGGCTCCTGA
CircID chr10:72340794|72341127
ORF Type ORF4
Protein Length 84
Nucleotide Length 255
Protein Sequence MTSSAMTRARRPGTAMGMGISTVALRPTSPLKTSSTCSLAAASLLVSSPPSPQPGIPGVMVGMACQPLPFPTDLAPDSAPLTPR
Nucleotide Sequence ATGACCAGTTCGGCGATGACAAGAGCCAGGCGGCCCGGCACGGCCATGGGCATGGGGATTTCCACCGTGGCTTTGAGGCCGACATCTCCCCTGAAGACCTCTTCAACATGTTCTTTGGCGGCGGCTTCCCTTCTAGTAAGTTCCCCACCCTCCCCACAGCCAGGTATCCCTGGGGTGATGGTGGGAATGGCATGCCAGCCTCTCCCTTTCCCAACAGACCTGGCTCCTGACTCAGCCCCTCTGACCCCCAGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab