CircRNA Information

General Information
circRNA Basic Information
CircID chr10:79092830|79093085
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCCACTCATTCATTCTCTTGCTGGGTACTCTCTGTACCTCAGTTTCCCCCACTGCTCTTTGAACCCCCAGGAACCTCTCTCCTACTGGCTGGTAGCTCAGCCCCTCAACTGCTTGCATTGTATTCAAACGGCTTTGGGGGTGCTGCTTCCGGTACTGTCTCCTCACTATCTCAAGGGCTCTATTATCAGAAAATCAAAATCTGTTCCAAAAGAAAAAAAACAAAATACACCCATCTTACAGAAAAGCGAGCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:79092830|79093085 hsa-let-7b-5p 0 0 1
chr10:79092830|79093085 hsa-let-7b-3p 0 0 1
chr10:79092830|79093085 hsa-let-7c-5p 0 0 1
chr10:79092830|79093085 hsa-let-7c-3p 0 0 1
chr10:79092830|79093085 hsa-let-7d-5p 0 0 1
chr10:79092830|79093085 hsa-let-7d-3p 0 0 1
chr10:79092830|79093085 hsa-let-7e-5p 0 0 1
chr10:79092830|79093085 hsa-let-7e-3p 0 0 1
chr10:79092830|79093085 hsa-miR-15a-5p 0 0 1
chr10:79092830|79093085 hsa-miR-15a-3p 0 0 1
chr10:79092830|79093085 hsa-miR-98-5p 0 0 1
chr10:79092830|79093085 hsa-miR-98-3p 0 0 1
chr10:79092830|79093085 hsa-let-7g-5p 0 0 1
chr10:79092830|79093085 hsa-let-7g-3p 0 0 1
chr10:79092830|79093085 hsa-let-7i-5p 0 0 1
chr10:79092830|79093085 hsa-let-7i-3p 0 0 1
chr10:79092830|79093085 hsa-miR-15b-5p 0 0 1
chr10:79092830|79093085 hsa-miR-15b-3p 0 0 1
chr10:79092830|79093085 hsa-miR-185-5p 0 0 1
chr10:79092830|79093085 hsa-miR-185-3p 0 0 1
chr10:79092830|79093085 hsa-miR-195-5p 0 0 1
chr10:79092830|79093085 hsa-miR-195-3p 0 0 1
chr10:79092830|79093085 hsa-miR-424-5p 0 0 1
chr10:79092830|79093085 hsa-miR-424-3p 0 0 1
chr10:79092830|79093085 hsa-miR-202-5p 0 0 1
chr10:79092830|79093085 hsa-miR-202-3p 0 0 1
chr10:79092830|79093085 hsa-miR-497-5p 0 0 1
chr10:79092830|79093085 hsa-miR-497-3p 0 0 1
chr10:79092830|79093085 hsa-miR-575 0 1 1
chr10:79092830|79093085 hsa-miR-609 0 0 1
chr10:79092830|79093085 hsa-miR-610 0 0 1
chr10:79092830|79093085 hsa-miR-625-5p 0 0 1
chr10:79092830|79093085 hsa-miR-625-3p 0 0 1
chr10:79092830|79093085 hsa-miR-634 0 0 1
chr10:79092830|79093085 hsa-miR-637 0 0 1
chr10:79092830|79093085 hsa-miR-921 1 1 1
chr10:79092830|79093085 hsa-miR-1275 0 0 1
chr10:79092830|79093085 hsa-miR-1276 1 1 1
chr10:79092830|79093085 hsa-miR-423-5p 0 1 1
chr10:79092830|79093085 hsa-miR-1233 0 0 1
chr10:79092830|79093085 hsa-miR-16 0 0 1
chr10:79092830|79093085 hsa-let-7a 0 0 1
chr10:79092830|79093085 hsa-let-7f 0 0 1
chr10:79092830|79093085 hsa-miR-129-3p 0 0 1
chr10:79092830|79093085 hsa-miR-101 0 0 1
chr10:79092830|79093085 hsa-miR-650 1 1 0
chr10:79092830|79093085 hsa-miR-1202 1 0 0
chr10:79092830|79093085 hsa-miR-2278 0 1 0
chr10:79092830|79093085 hsa-miR-3181 1 0 0
chr10:79092830|79093085 hsa-miR-4298 1 0 0
chr10:79092830|79093085 hsa-miR-4455 1 0 0
chr10:79092830|79093085 hsa-miR-4488 1 0 0
chr10:79092830|79093085 hsa-miR-4496 0 1 0
chr10:79092830|79093085 hsa-miR-4656 1 0 0
chr10:79092830|79093085 hsa-miR-4663 0 1 0
chr10:79092830|79093085 hsa-miR-4689 1 1 0
chr10:79092830|79093085 hsa-miR-4739 1 0 0
chr10:79092830|79093085 hsa-miR-4780 1 0 0
chr10:79092830|79093085 hsa-miR-4784 0 1 0
chr10:79092830|79093085 hsa-miR-5192 1 0 0
chr10:79092830|79093085 hsa-miR-5707 0 1 0
chr10:79092830|79093085 hsa-miR-5739 1 0 0
chr10:79092830|79093085 hsa-miR-6081 1 1 0
chr10:79092830|79093085 hsa-miR-6085 0 1 0
chr10:79092830|79093085 hsa-miR-8085 1 0 0
chr10:79092830|79093085 hsa-miR-12127 0 1 0
chr10:79092830|79093085 hsa-miR-3150a-3p 1 0 0
chr10:79092830|79093085 hsa-miR-1233-3p 1 0 0
chr10:79092830|79093085 hsa-miR-1225-3p 1 0 0
chr10:79092830|79093085 hsa-miR-4695-5p 1 1 0
chr10:79092830|79093085 hsa-miR-197-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6742-5p 1 0 0
chr10:79092830|79093085 hsa-miR-3180-3p 1 0 0
chr10:79092830|79093085 hsa-miR-6772-5p 1 0 0
chr10:79092830|79093085 hsa-miR-23a-5p 1 1 0
chr10:79092830|79093085 hsa-miR-6782-5p 1 0 0
chr10:79092830|79093085 hsa-miR-3194-5p 0 1 0
chr10:79092830|79093085 hsa-miR-7855-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6852-5p 0 1 0
chr10:79092830|79093085 hsa-miR-7109-5p 1 0 0
chr10:79092830|79093085 hsa-miR-1226-5p 1 0 0
chr10:79092830|79093085 hsa-miR-4732-5p 1 0 0
chr10:79092830|79093085 hsa-miR-7160-3p 1 0 0
chr10:79092830|79093085 hsa-miR-744-5p 1 0 0
chr10:79092830|79093085 hsa-miR-1296-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6851-3p 1 0 0
chr10:79092830|79093085 hsa-miR-371b-3p 0 1 0
chr10:79092830|79093085 hsa-miR-1244 0 1 0
chr10:79092830|79093085 hsa-miR-99a-3p 1 0 0
chr10:79092830|79093085 hsa-miR-6769b-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6812-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6870-5p 1 0 0
chr10:79092830|79093085 hsa-miR-1343-5p 1 0 0
chr10:79092830|79093085 hsa-miR-3180 1 0 0
chr10:79092830|79093085 hsa-miR-6752-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6803-5p 1 1 0
chr10:79092830|79093085 hsa-miR-6813-5p 1 1 0
chr10:79092830|79093085 hsa-miR-7110-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6751-5p 1 0 0
chr10:79092830|79093085 hsa-miR-7111-5p 1 0 0
chr10:79092830|79093085 hsa-miR-4728-5p 1 0 0
chr10:79092830|79093085 hsa-miR-328-5p 1 0 0
chr10:79092830|79093085 hsa-miR-4726-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6738-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6795-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6848-5p 1 0 0
chr10:79092830|79093085 hsa-miR-4723-5p 0 1 0
chr10:79092830|79093085 hsa-miR-939-5p 1 0 0
chr10:79092830|79093085 hsa-miR-6511b-5p 1 1 0
chr10:79092830|79093085 hsa-miR-6856-5p 1 0 0
chr10:79092830|79093085 hsa-miR-1914-3p 1 0 0
chr10:79092830|79093085 hsa-miR-4665-5p 0 1 0
chr10:79092830|79093085 hsa-miR-4472 0 1 0
chr10:79092830|79093085 hsa-miR-3184-5p 0 1 0
chr10:79092830|79093085 hsa-miR-6791-5p 1 0 0
chr10:79092830|79093085 hsa-miR-320a-3p 1 0 0
chr10:79092830|79093085 hsa-miR-320b 1 0 0
chr10:79092830|79093085 hsa-miR-4676-5p 0 1 0
chr10:79092830|79093085 hsa-miR-3913-5p 0 1 0
chr10:79092830|79093085 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:79092830|79093085
ORF Type ORF1
Protein Length 85
Nucleotide Length 255
Protein Sequence LPLIHSLAGYSLYLSFPHCSLNPQEPLSYWLVAQPLNCLHCIQTALGVLLPVLSPHYLKGSIIRKSKSVPKEKKQNTPILQKSEL
Nucleotide Sequence CTGCCACTCATTCATTCTCTTGCTGGGTACTCTCTGTACCTCAGTTTCCCCCACTGCTCTTTGAACCCCCAGGAACCTCTCTCCTACTGGCTGGTAGCTCAGCCCCTCAACTGCTTGCATTGTATTCAAACGGCTTTGGGGGTGCTGCTTCCGGTACTGTCTCCTCACTATCTCAAGGGCTCTATTATCAGAAAATCAAAATCTGTTCCAAAAGAAAAAAAACAAAATACACCCATCTTACAGAAAAGCGAGCTA
CircID chr10:79092830|79093085
ORF Type ORF2
Protein Length 67
Nucleotide Length 201
Protein Sequence MLFEPPGTSLLLAGSSAPQLLALYSNGFGGAASGTVSSLSQGLYYQKIKICSKRKKTKYTHLTEKRA
Nucleotide Sequence CTGCTCTTTGAACCCCCAGGAACCTCTCTCCTACTGGCTGGTAGCTCAGCCCCTCAACTGCTTGCATTGTATTCAAACGGCTTTGGGGGTGCTGCTTCCGGTACTGTCTCCTCACTATCTCAAGGGCTCTATTATCAGAAAATCAAAATCTGTTCCAAAAGAAAAAAAACAAAATACACCCATCTTACAGAAAAGCGAGCT
CircID chr10:79092830|79093085
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MNTMQAVEGLSYQPVGERFLGVQRAVGETEVQRVPSKRMNEWQ
Nucleotide Sequence TTGAATACAATGCAAGCAGTTGAGGGGCTGAGCTACCAGCCAGTAGGAGAGAGGTTCCTGGGGGTTCAAAGAGCAGTGGGGGAAACTGAGGTACAGAGAGTACCCAGCAAGAGAATGAATGAGTGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab