CircRNA Information

General Information
circRNA Basic Information
CircID chr10:79313409|79313558
Strand +
CircType exon
Host Gene ENSG00000108175.15;
Algorism CIRI2;
Sequence ACCTGCTCTCTCTGTTCCCCAAGCCTGGGCCCTGTCTGAGCTTGGAGGTGGAGCCTCAGGGACGTCCTGGCTCAGAAGATGTCCTGGCCCTCTTCCCCACCAGTCCCCAAGCAGGAATGGCAGACCCCCTCTCAAACACAGACTCTTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:79313409|79313558 hsa-miR-370-5p 0 0 1
chr10:79313409|79313558 hsa-miR-370-3p 0 0 1
chr10:79313409|79313558 hsa-miR-346 0 1 1
chr10:79313409|79313558 hsa-miR-541-5p 0 0 1
chr10:79313409|79313558 hsa-miR-541-3p 0 0 1
chr10:79313409|79313558 hsa-miR-1324 0 0 1
chr10:79313409|79313558 hsa-miR-491-5p 0 1 1
chr10:79313409|79313558 hsa-miR-485-5p 0 0 1
chr10:79313409|79313558 hsa-miR-654-5p 0 0 1
chr10:79313409|79313558 hsa-miR-125a-5p 0 1 1
chr10:79313409|79313558 hsa-miR-125b 0 0 1
chr10:79313409|79313558 hsa-miR-762 1 0 0
chr10:79313409|79313558 hsa-miR-940 1 1 0
chr10:79313409|79313558 hsa-miR-1182 1 0 0
chr10:79313409|79313558 hsa-miR-2110 1 1 0
chr10:79313409|79313558 hsa-miR-711 1 0 0
chr10:79313409|79313558 hsa-miR-3135a 1 0 0
chr10:79313409|79313558 hsa-miR-544b 0 1 0
chr10:79313409|79313558 hsa-miR-4303 0 1 0
chr10:79313409|79313558 hsa-miR-4281 1 0 0
chr10:79313409|79313558 hsa-miR-4278 1 0 0
chr10:79313409|79313558 hsa-miR-3918 1 1 0
chr10:79313409|79313558 hsa-miR-4450 0 1 0
chr10:79313409|79313558 hsa-miR-4656 1 0 0
chr10:79313409|79313558 hsa-miR-4739 1 0 0
chr10:79313409|79313558 hsa-miR-5572 1 0 0
chr10:79313409|79313558 hsa-miR-5787 1 0 0
chr10:79313409|79313558 hsa-miR-6075 1 0 0
chr10:79313409|79313558 hsa-miR-6132 1 0 0
chr10:79313409|79313558 hsa-miR-8052 1 1 0
chr10:79313409|79313558 hsa-miR-8089 1 1 0
chr10:79313409|79313558 hsa-miR-12126 1 0 0
chr10:79313409|79313558 hsa-miR-4747-3p 1 0 0
chr10:79313409|79313558 hsa-miR-4433a-3p 1 0 0
chr10:79313409|79313558 hsa-miR-6765-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6894-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6857-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6741-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6716-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6805-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6786-5p 1 0 0
chr10:79313409|79313558 hsa-miR-5088-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6740-5p 1 1 0
chr10:79313409|79313558 hsa-miR-193b-5p 1 0 0
chr10:79313409|79313558 hsa-miR-4640-5p 1 1 0
chr10:79313409|79313558 hsa-miR-6771-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6749-5p 1 0 0
chr10:79313409|79313558 hsa-miR-149-3p 1 0 0
chr10:79313409|79313558 hsa-miR-6824-5p 1 0 0
chr10:79313409|79313558 hsa-miR-574-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6895-5p 1 1 0
chr10:79313409|79313558 hsa-miR-7160-3p 1 1 0
chr10:79313409|79313558 hsa-miR-3191-3p 1 0 0
chr10:79313409|79313558 hsa-miR-4652-5p 0 1 0
chr10:79313409|79313558 hsa-miR-5000-3p 1 1 0
chr10:79313409|79313558 hsa-miR-3074-5p 0 1 0
chr10:79313409|79313558 hsa-miR-1296-5p 1 0 0
chr10:79313409|79313558 hsa-miR-4649-3p 0 1 0
chr10:79313409|79313558 hsa-miR-4524b-3p 0 1 0
chr10:79313409|79313558 hsa-miR-1207-5p 1 0 0
chr10:79313409|79313558 hsa-miR-4763-3p 1 0 0
chr10:79313409|79313558 hsa-miR-6787-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6816-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6752-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6756-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6769a-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6803-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6819-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6851-5p 1 0 0
chr10:79313409|79313558 hsa-miR-7110-5p 1 0 0
chr10:79313409|79313558 hsa-miR-1249-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6763-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6779-5p 1 0 0
chr10:79313409|79313558 hsa-miR-7111-5p 1 0 0
chr10:79313409|79313558 hsa-miR-3620-5p 1 0 0
chr10:79313409|79313558 hsa-miR-4728-5p 1 0 0
chr10:79313409|79313558 hsa-miR-5196-5p 1 1 0
chr10:79313409|79313558 hsa-miR-6780b-5p 0 1 0
chr10:79313409|79313558 hsa-miR-6836-5p 1 0 0
chr10:79313409|79313558 hsa-miR-10526-3p 1 0 0
chr10:79313409|79313558 hsa-miR-1909-3p 1 0 0
chr10:79313409|79313558 hsa-miR-328-5p 1 0 0
chr10:79313409|79313558 hsa-miR-4685-5p 1 1 0
chr10:79313409|79313558 hsa-miR-4725-3p 1 1 0
chr10:79313409|79313558 hsa-miR-4726-5p 1 1 0
chr10:79313409|79313558 hsa-miR-4745-5p 1 0 0
chr10:79313409|79313558 hsa-miR-4749-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6729-5p 1 0 0
chr10:79313409|79313558 hsa-miR-675-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6846-5p 1 1 0
chr10:79313409|79313558 hsa-miR-6848-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6858-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6845-5p 1 0 0
chr10:79313409|79313558 hsa-miR-4758-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6731-5p 0 1 0
chr10:79313409|79313558 hsa-miR-6758-5p 1 0 0
chr10:79313409|79313558 hsa-miR-1199-5p 0 1 0
chr10:79313409|79313558 hsa-miR-6773-5p 1 0 0
chr10:79313409|79313558 hsa-miR-1914-3p 1 0 0
chr10:79313409|79313558 hsa-miR-4667-5p 0 1 0
chr10:79313409|79313558 hsa-miR-7107-3p 0 1 0
chr10:79313409|79313558 hsa-miR-6837-5p 1 0 0
chr10:79313409|79313558 hsa-miR-6817-5p 0 1 0
chr10:79313409|79313558 hsa-miR-4769-3p 0 1 0
chr10:79313409|79313558 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:79313409|79313558
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MAQKMSWPSSPPVPKQEWQTPSQTQTLV
Nucleotide Sequence CTGGCTCAGAAGATGTCCTGGCCCTCTTCCCCACCAGTCCCCAAGCAGGAATGGCAGACCCCCTCTCAAACACAGACTCTTGTC
CircID chr10:79313409|79313558
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MSELGGGASGTSWLRRCPGPLPHQSPSRNGRPPLKHRLL
Nucleotide Sequence CTGTCTGAGCTTGGAGGTGGAGCCTCAGGGACGTCCTGGCTCAGAAGATGTCCTGGCCCTCTTCCCCACCAGTCCCCAAGCAGGAATGGCAGACCCCCTCTCAAACACAGACTCTTG
CircID chr10:79313409|79313558
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence LLSLFPKPGPCLSLEVEPQGRPGSEDVLALFPTSPQAGMADPLSNTDSC
Nucleotide Sequence CTGCTCTCTCTGTTCCCCAAGCCTGGGCCCTGTCTGAGCTTGGAGGTGGAGCCTCAGGGACGTCCTGGCTCAGAAGATGTCCTGGCCCTCTTCCCCACCAGTCCCCAAGCAGGAATGGCAGACCCCCTCTCAAACACAGACTCTTGT
CircID chr10:79313409|79313558
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MCLRGGLPFLLGDWWGRGPGHLLSQDVPEAPPPSSDRAQAWGTERAG
Nucleotide Sequence CTGTGTTTGAGAGGGGGTCTGCCATTCCTGCTTGGGGACTGGTGGGGAAGAGGGCCAGGACATCTTCTGAGCCAGGACGTCCCTGAGGCTCCACCTCCAAGCTCAGACAGGGCCCAGGCTTGGGGAACAGAGAGAGCAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab