CircRNA Information

General Information
circRNA Basic Information
CircID chr10:80432327|80432515
Strand -
CircType exon
Host Gene ENSG00000122378.12;
Algorism CIRI2;
Sequence CTGGGAAATAGGAGGCTTAAAATTGACTGCCAGGCTGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGAGCAAGTCACTTGAGGTCGGGAGTTCGAGACCAGCCTGAGCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATCACCCGGGTGTGGTGGCAGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:80432327|80432515 hsa-miR-17-5p 0 0 1
chr10:80432327|80432515 hsa-miR-17-3p 0 0 1
chr10:80432327|80432515 hsa-miR-20a-5p 0 0 1
chr10:80432327|80432515 hsa-miR-20a-3p 0 0 1
chr10:80432327|80432515 hsa-miR-93-5p 0 0 1
chr10:80432327|80432515 hsa-miR-93-3p 0 0 1
chr10:80432327|80432515 hsa-miR-106a-5p 0 0 1
chr10:80432327|80432515 hsa-miR-106a-3p 0 0 1
chr10:80432327|80432515 hsa-miR-34a-5p 0 0 1
chr10:80432327|80432515 hsa-miR-34a-3p 0 0 1
chr10:80432327|80432515 hsa-miR-150-5p 0 0 1
chr10:80432327|80432515 hsa-miR-150-3p 0 0 1
chr10:80432327|80432515 hsa-miR-106b-5p 0 0 1
chr10:80432327|80432515 hsa-miR-106b-3p 0 0 1
chr10:80432327|80432515 hsa-miR-302a-5p 0 0 1
chr10:80432327|80432515 hsa-miR-302a-3p 0 0 1
chr10:80432327|80432515 hsa-miR-302b-5p 0 0 1
chr10:80432327|80432515 hsa-miR-302b-3p 0 0 1
chr10:80432327|80432515 hsa-miR-302c-5p 0 0 1
chr10:80432327|80432515 hsa-miR-302c-3p 0 0 1
chr10:80432327|80432515 hsa-miR-302d-5p 0 0 1
chr10:80432327|80432515 hsa-miR-302d-3p 0 0 1
chr10:80432327|80432515 hsa-miR-372-5p 0 0 1
chr10:80432327|80432515 hsa-miR-372-3p 0 0 1
chr10:80432327|80432515 hsa-miR-373-5p 0 0 1
chr10:80432327|80432515 hsa-miR-373-3p 0 0 1
chr10:80432327|80432515 hsa-miR-20b-5p 0 0 1
chr10:80432327|80432515 hsa-miR-20b-3p 0 0 1
chr10:80432327|80432515 hsa-miR-449a 0 0 1
chr10:80432327|80432515 hsa-miR-484 0 0 1
chr10:80432327|80432515 hsa-miR-520e-5p 0 0 1
chr10:80432327|80432515 hsa-miR-520e-3p 0 0 1
chr10:80432327|80432515 hsa-miR-520b-5p 0 0 1
chr10:80432327|80432515 hsa-miR-520b-3p 0 0 1
chr10:80432327|80432515 hsa-miR-519d-5p 0 0 1
chr10:80432327|80432515 hsa-miR-519d-3p 0 0 1
chr10:80432327|80432515 hsa-miR-520g-5p 0 0 1
chr10:80432327|80432515 hsa-miR-520g-3p 0 0 1
chr10:80432327|80432515 hsa-miR-520h 0 0 1
chr10:80432327|80432515 hsa-miR-552-5p 0 0 1
chr10:80432327|80432515 hsa-miR-552-3p 0 0 1
chr10:80432327|80432515 hsa-miR-449b-5p 0 0 1
chr10:80432327|80432515 hsa-miR-449b-3p 0 0 1
chr10:80432327|80432515 hsa-miR-411-5p 0 0 1
chr10:80432327|80432515 hsa-miR-411-3p 0 0 1
chr10:80432327|80432515 hsa-miR-1178-5p 0 0 1
chr10:80432327|80432515 hsa-miR-1178-3p 0 0 1
chr10:80432327|80432515 hsa-miR-302e 0 0 1
chr10:80432327|80432515 hsa-miR-512-3p 0 1 1
chr10:80432327|80432515 hsa-miR-483-5p 0 0 1
chr10:80432327|80432515 hsa-miR-520d-3p 0 0 1
chr10:80432327|80432515 hsa-miR-34c-5p 0 0 1
chr10:80432327|80432515 hsa-miR-520a-3p 0 0 1
chr10:80432327|80432515 hsa-miR-520c-3p 0 0 1
chr10:80432327|80432515 hsa-miR-590-3p 0 0 1
chr10:80432327|80432515 hsa-miR-550 0 0 1
chr10:80432327|80432515 hsa-miR-346 1 0 0
chr10:80432327|80432515 hsa-miR-596 1 0 0
chr10:80432327|80432515 hsa-miR-636 0 1 0
chr10:80432327|80432515 hsa-miR-638 1 0 0
chr10:80432327|80432515 hsa-miR-1303 1 1 0
chr10:80432327|80432515 hsa-miR-3159 1 1 0
chr10:80432327|80432515 hsa-miR-4258 1 0 0
chr10:80432327|80432515 hsa-miR-4252 0 1 0
chr10:80432327|80432515 hsa-miR-4452 0 1 0
chr10:80432327|80432515 hsa-miR-3972 1 0 0
chr10:80432327|80432515 hsa-miR-7703 1 0 0
chr10:80432327|80432515 hsa-miR-8073 0 1 0
chr10:80432327|80432515 hsa-miR-12115 1 0 0
chr10:80432327|80432515 hsa-miR-500b-3p 0 1 0
chr10:80432327|80432515 hsa-miR-512-5p 0 1 0
chr10:80432327|80432515 hsa-miR-1247-3p 1 0 0
chr10:80432327|80432515 hsa-miR-6765-5p 1 0 0
chr10:80432327|80432515 hsa-miR-212-5p 0 1 0
chr10:80432327|80432515 hsa-miR-6854-5p 1 0 0
chr10:80432327|80432515 hsa-miR-3934-5p 0 1 0
chr10:80432327|80432515 hsa-miR-6089 1 0 0
chr10:80432327|80432515 hsa-miR-6741-5p 1 0 0
chr10:80432327|80432515 hsa-miR-6842-3p 1 0 0
chr10:80432327|80432515 hsa-miR-3130-3p 0 1 0
chr10:80432327|80432515 hsa-miR-3194-5p 1 0 0
chr10:80432327|80432515 hsa-miR-3934-3p 0 1 0
chr10:80432327|80432515 hsa-miR-4763-5p 1 1 0
chr10:80432327|80432515 hsa-miR-3944-3p 0 1 0
chr10:80432327|80432515 hsa-miR-548au-3p 0 1 0
chr10:80432327|80432515 hsa-miR-6894-3p 0 1 0
chr10:80432327|80432515 hsa-miR-6813-3p 0 1 0
chr10:80432327|80432515 hsa-miR-1229-3p 0 1 0
chr10:80432327|80432515 hsa-miR-221-5p 0 1 0
chr10:80432327|80432515 hsa-miR-409-3p 1 0 0
chr10:80432327|80432515 hsa-miR-4482-3p 0 1 0
chr10:80432327|80432515 hsa-miR-6812-5p 1 0 0
chr10:80432327|80432515 hsa-miR-1271-3p 0 1 0
chr10:80432327|80432515 hsa-miR-6855-5p 0 1 0
chr10:80432327|80432515 hsa-miR-324-3p 0 1 0
chr10:80432327|80432515 hsa-miR-4722-3p 1 1 0
chr10:80432327|80432515 hsa-miR-6727-3p 1 1 0
chr10:80432327|80432515 hsa-miR-4701-5p 1 0 0
chr10:80432327|80432515 hsa-miR-619-5p 1 1 0
chr10:80432327|80432515 hsa-miR-135a-2-3p 1 0 0
chr10:80432327|80432515 hsa-miR-6807-3p 0 1 0
chr10:80432327|80432515 hsa-miR-6843-3p 0 1 0
chr10:80432327|80432515 hsa-miR-92b-3p 0 1 0
chr10:80432327|80432515 hsa-miR-6820-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr10:80432327|80432515
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MRSGVRDQPEQHGETPSLLKIQKSPGCGGRH
Nucleotide Sequence TTGAGGTCGGGAGTTCGAGACCAGCCTGAGCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAATCACCCGGGTGTGGTGGCAGGCAC
CircID chr10:80432327|80432515
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MTARLGAVAHTCNPSTLGGQGEQVT
Nucleotide Sequence TTGACTGCCAGGCTGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGAGCAAGTCACTTGA
CircID chr10:80432327|80432515
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MPGWVQWLTPVIPALWEAKVSKSLEVGSSRPA
Nucleotide Sequence CTGCCAGGCTGGGTGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGAGCAAGTCACTTGAGGTCGGGAGTTCGAGACCAGCCTGA
CircID chr10:80432327|80432515
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MLLRLVSNSRPQVTCSPWPPKVLGLQV
Nucleotide Sequence ATGTTGCTCAGGCTGGTCTCGAACTCCCGACCTCAAGTGACTTGCTCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGA
CircID chr10:80432327|80432515
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MPPHPGDFCIFSRDGVSPCCSGWSRTPDLK
Nucleotide Sequence CTGCCACCACACCCGGGTGATTTTTGTATTTTTAGTAGAGACGGGGTTTCGCCATGTTGCTCAGGCTGGTCTCGAACTCCCGACCTCAAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab