CircRNA Information

General Information
circRNA Basic Information
CircID chr10:80518635|80518988
Strand -
CircType exon
Host Gene ENSG00000108219.13;
Algorism CIRI2;
Sequence CAGCTATTCTCCTGGCGCCGGAACTGCCTCTGGTCTTGATAGCATTAAGCCCTGATGGCGCCGGTGGCGCGGTGGGCATGGTTCTTCACTGAGAGCCGGCTCTCCTTTTCTTAAAGTGTGTAAATAGTTTATTTATAGGGGTAAGAATGTTCTCACACCATTTCACTTCCTCTTCCTCTCCTCCAGCATTCTCCTCTGAGCAGCCTTAGATAGTGTCCATGGCTGGAGCCGACCCTTTGAGTCCCCTTGAGTGTCTTAAGAACCAGCCCACAACAGCCTCTCTTTCTCCTCCACATACTGCAGCCTCCCTCCATGCATCCCACATACAAGCACTCCCCCACTCCCCAGCGTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:80518635|80518988 hsa-miR-208a-5p 0 0 1
chr10:80518635|80518988 hsa-miR-208a-3p 0 0 1
chr10:80518635|80518988 hsa-miR-146a-5p 0 0 1
chr10:80518635|80518988 hsa-miR-146a-3p 0 0 1
chr10:80518635|80518988 hsa-miR-155-5p 0 0 1
chr10:80518635|80518988 hsa-miR-155-3p 0 0 1
chr10:80518635|80518988 hsa-miR-520f-5p 0 0 1
chr10:80518635|80518988 hsa-miR-520f-3p 0 0 1
chr10:80518635|80518988 hsa-miR-522-5p 0 0 1
chr10:80518635|80518988 hsa-miR-522-3p 0 0 1
chr10:80518635|80518988 hsa-miR-567 -7 0 1
chr10:80518635|80518988 hsa-miR-589-5p 0 0 1
chr10:80518635|80518988 hsa-miR-589-3p 0 0 1
chr10:80518635|80518988 hsa-miR-603 -1 0 1
chr10:80518635|80518988 hsa-miR-625-5p 0 0 1
chr10:80518635|80518988 hsa-miR-625-3p 0 0 1
chr10:80518635|80518988 hsa-miR-636 -4 0 1
chr10:80518635|80518988 hsa-miR-641 -7 0 1
chr10:80518635|80518988 hsa-miR-643 -5 0 1
chr10:80518635|80518988 hsa-miR-766-5p 0 0 1
chr10:80518635|80518988 hsa-miR-766-3p 0 0 1
chr10:80518635|80518988 hsa-miR-765 -24 1 1
chr10:80518635|80518988 hsa-miR-888-5p 0 0 1
chr10:80518635|80518988 hsa-miR-888-3p 0 0 1
chr10:80518635|80518988 hsa-miR-665 0 0 1
chr10:80518635|80518988 hsa-miR-543 0 0 1
chr10:80518635|80518988 hsa-miR-208b-5p 0 0 1
chr10:80518635|80518988 hsa-miR-208b-3p 0 0 1
chr10:80518635|80518988 hsa-miR-939-5p 0 0 1
chr10:80518635|80518988 hsa-miR-939-3p 0 0 1
chr10:80518635|80518988 hsa-miR-297 -14 1 1
chr10:80518635|80518988 hsa-miR-1180-5p 0 0 1
chr10:80518635|80518988 hsa-miR-1180-3p 0 0 1
chr10:80518635|80518988 hsa-miR-1287-5p 0 0 1
chr10:80518635|80518988 hsa-miR-1287-3p 0 0 1
chr10:80518635|80518988 hsa-miR-1275 -21 1 1
chr10:80518635|80518988 hsa-miR-1321 -15 1 1
chr10:80518635|80518988 hsa-miR-1827 -7 0 1
chr10:80518635|80518988 hsa-miR-485-5p -13 0 1
chr10:80518635|80518988 hsa-miR-299-3p -12 1 1
chr10:80518635|80518988 hsa-miR-767-3p -3 0 1
chr10:80518635|80518988 hsa-miR-146b-5p -3 0 1
chr10:80518635|80518988 hsa-miR-362-3p -2 0 1
chr10:80518635|80518988 hsa-miR-548b-3p 2 0 1
chr10:80518635|80518988 hsa-miR-1280 0 0 1
chr10:80518635|80518988 hsa-miR-886-5p 0 0 1
chr10:80518635|80518988 hsa-miR-329 0 0 1
chr10:80518635|80518988 hsa-miR-203 0 0 1
chr10:80518635|80518988 hsa-miR-499-5p 0 0 1
chr10:80518635|80518988 hsa-miR-3125 -17 1 0
chr10:80518635|80518988 hsa-miR-4311 -13 1 0
chr10:80518635|80518988 hsa-miR-3916 -20 1 0
chr10:80518635|80518988 hsa-miR-3135b -21 1 0
chr10:80518635|80518988 hsa-miR-4481 -15 1 0
chr10:80518635|80518988 hsa-miR-4510 -21 1 0
chr10:80518635|80518988 hsa-miR-4654 -18 1 0
chr10:80518635|80518988 hsa-miR-4657 -20 1 0
chr10:80518635|80518988 hsa-miR-4689 -20 1 0
chr10:80518635|80518988 hsa-miR-4739 -28 1 0
chr10:80518635|80518988 hsa-miR-4784 -17 1 0
chr10:80518635|80518988 hsa-miR-5698 -24 1 0
chr10:80518635|80518988 hsa-miR-6070 -10 1 0
chr10:80518635|80518988 hsa-miR-6129 -16 1 0
chr10:80518635|80518988 hsa-miR-6130 -16 1 0
chr10:80518635|80518988 hsa-miR-8089 -24 1 0
chr10:80518635|80518988 hsa-miR-4687-3p -20 1 0
chr10:80518635|80518988 hsa-miR-6720-5p -9 1 0
chr10:80518635|80518988 hsa-miR-27a-5p -10 1 0
chr10:80518635|80518988 hsa-miR-6728-5p -18 1 0
chr10:80518635|80518988 hsa-miR-6515-5p -18 1 0
chr10:80518635|80518988 hsa-miR-7847-3p -28 1 0
chr10:80518635|80518988 hsa-miR-6867-5p -22 1 0
chr10:80518635|80518988 hsa-miR-6829-5p -20 1 0
chr10:80518635|80518988 hsa-miR-3150b-3p -20 1 0
chr10:80518635|80518988 hsa-miR-3127-5p -12 1 0
chr10:80518635|80518988 hsa-miR-6847-5p -16 1 0
chr10:80518635|80518988 hsa-miR-6878-5p -17 1 0
chr10:80518635|80518988 hsa-miR-3922-5p -12 1 0
chr10:80518635|80518988 hsa-miR-584-3p -9 1 0
chr10:80518635|80518988 hsa-miR-6872-3p -7 1 0
chr10:80518635|80518988 hsa-miR-6870-5p -24 1 0
chr10:80518635|80518988 hsa-miR-11181-3p -24 1 0
chr10:80518635|80518988 hsa-miR-1249-5p -23 1 0
chr10:80518635|80518988 hsa-miR-6763-5p -26 1 0
chr10:80518635|80518988 hsa-miR-6797-5p -23 1 0
chr10:80518635|80518988 hsa-miR-7111-5p -23 1 0
chr10:80518635|80518988 hsa-miR-6846-5p -20 1 0
chr10:80518635|80518988 hsa-miR-4769-5p -16 1 0
chr10:80518635|80518988 hsa-miR-365b-5p -11 1 0
chr10:80518635|80518988 hsa-miR-6758-5p -9 1 0
chr10:80518635|80518988 hsa-miR-6856-5p -21 1 0
chr10:80518635|80518988 hsa-miR-4700-5p -20 1 0
chr10:80518635|80518988 hsa-miR-4472 -16 1 0
chr10:80518635|80518988 hsa-miR-4667-5p -19 1 0
chr10:80518635|80518988 hsa-miR-4756-5p -15 1 0
chr10:80518635|80518988 hsa-miR-6884-5p -18 1 0
chr10:80518635|80518988 hsa-miR-520e-5p -6 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:80518635|80518988
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MSVLRTSPQQPLFLLHILQPPSMHPTYKHSPTPQRG
Nucleotide Sequence TTGAGTGTCTTAAGAACCAGCCCACAACAGCCTCTCTTTCTCCTCCACATACTGCAGCCTCCCTCCATGCATCCCACATACAAGCACTCCCCCACTCCCCAGCGTGGC
CircID chr10:80518635|80518988
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MAPELPLVLIALSPDGAGGAVGMVLH
Nucleotide Sequence CTGGCGCCGGAACTGCCTCTGGTCTTGATAGCATTAAGCCCTGATGGCGCCGGTGGCGCGGTGGGCATGGTTCTTCACTGA
CircID chr10:80518635|80518988
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MAGADPLSPLECLKNQPTTASLSPPHTAASLHASHIQALPHSPAW
Nucleotide Sequence ATGGCTGGAGCCGACCCTTTGAGTCCCCTTGAGTGTCTTAAGAACCAGCCCACAACAGCCTCTCTTTCTCCTCCACATACTGCAGCCTCCCTCCATGCATCCCACATACAAGCACTCCCCCACTCCCCAGCGTGG
CircID chr10:80518635|80518988
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MGSGGVLVCGMHGGRLQYVEEKERLLWAGS
Nucleotide Sequence CTGGGGAGTGGGGGAGTGCTTGTATGTGGGATGCATGGAGGGAGGCTGCAGTATGTGGAGGAGAAAGAGAGGCTGTTGTGGGCTGGTTCTTAA
CircID chr10:80518635|80518988
ORF Type ORF5
Protein Length 58
Nucleotide Length 177
Protein Sequence MYVGCMEGGCSMWRRKRGCCGLVLKTLKGTQRVGSSHGHYLRLLRGECWRRGRGSEMV
Nucleotide Sequence TTGTATGTGGGATGCATGGAGGGAGGCTGCAGTATGTGGAGGAGAAAGAGAGGCTGTTGTGGGCTGGTTCTTAAGACACTCAAGGGGACTCAAAGGGTCGGCTCCAGCCATGGACACTATCTAAGGCTGCTCAGAGGAGAATGCTGGAGGAGAGGAAGAGGAAGTGAAATGGTGTGA
CircID chr10:80518635|80518988
ORF Type ORF6
Protein Length 39
Nucleotide Length 120
Protein Sequence MWDAWREAAVCGGEREAVVGWFLRHSRGLKGSAPAMDTI
Nucleotide Sequence ATGTGGGATGCATGGAGGGAGGCTGCAGTATGTGGAGGAGAAAGAGAGGCTGTTGTGGGCTGGTTCTTAAGACACTCAAGGGGACTCAAAGGGTCGGCTCCAGCCATGGACACTATCTAA
CircID chr10:80518635|80518988
ORF Type ORF7
Protein Length 26
Nucleotide Length 78
Protein Sequence MPTAPPAPSGLNAIKTRGSSGARRIA
Nucleotide Sequence ATGCCCACCGCGCCACCGGCGCCATCAGGGCTTAATGCTATCAAGACCAGAGGCAGTTCCGGCGCCAGGAGAATAGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab