CircRNA Information

General Information
circRNA Basic Information
CircID chr10:809693|809881
Strand -
CircType exon
Host Gene ENSG00000107929.13;
Algorism CIRI2;
Sequence CCTCGAGGAGCGACCACATGACCCCCGCGCTGTGAGCTGCTGGCGGCCAGCGCCCTCGCCTCGATTGTCTGCAGCCCTGTAGTGGGCCGCGAGGCACGCAAGCCGCAACTACAGCTCGCCAGCGGGGCACACAGACAGGCATGCACCACCACTACCCGTCGCCCGGATACACTGAACTGGTTTTGAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:809693|809881 hsa-miR-646 0 0 1
chr10:809693|809881 hsa-miR-1323 0 0 1
chr10:809693|809881 hsa-miR-548o-3p 0 0 1
chr10:809693|809881 hsa-miR-548o 0 0 1
chr10:809693|809881 hsa-miR-140-5p 0 0 1
chr10:809693|809881 hsa-miR-876-3p 0 0 1
chr10:809693|809881 hsa-miR-323-5p 0 0 1
chr10:809693|809881 hsa-miR-346 1 0 0
chr10:809693|809881 hsa-miR-608 1 0 0
chr10:809693|809881 hsa-miR-658 1 0 0
chr10:809693|809881 hsa-miR-762 1 0 0
chr10:809693|809881 hsa-miR-663b 1 0 0
chr10:809693|809881 hsa-miR-1469 1 0 0
chr10:809693|809881 hsa-miR-3907 1 0 0
chr10:809693|809881 hsa-miR-4421 0 1 0
chr10:809693|809881 hsa-miR-4467 1 1 0
chr10:809693|809881 hsa-miR-4525 1 0 0
chr10:809693|809881 hsa-miR-4669 1 0 0
chr10:809693|809881 hsa-miR-4706 1 0 0
chr10:809693|809881 hsa-miR-8072 1 0 0
chr10:809693|809881 hsa-miR-9899 1 0 0
chr10:809693|809881 hsa-miR-9901 0 1 0
chr10:809693|809881 hsa-miR-6089 1 0 0
chr10:809693|809881 hsa-miR-7108-5p 1 0 0
chr10:809693|809881 hsa-miR-6829-5p 0 1 0
chr10:809693|809881 hsa-miR-615-5p 1 0 0
chr10:809693|809881 hsa-miR-6784-5p 1 0 0
chr10:809693|809881 hsa-miR-885-3p 1 0 0
chr10:809693|809881 hsa-miR-92b-5p 1 0 0
chr10:809693|809881 hsa-miR-3120-5p 0 1 0
chr10:809693|809881 hsa-miR-5000-5p 0 1 0
chr10:809693|809881 hsa-miR-4750-5p 1 0 0
chr10:809693|809881 hsa-miR-668-5p 1 0 0
chr10:809693|809881 hsa-miR-3670 1 0 0
chr10:809693|809881 hsa-miR-10400-5p 1 0 0
chr10:809693|809881 hsa-miR-6787-5p 1 0 0
chr10:809693|809881 hsa-miR-6816-5p 1 0 0
chr10:809693|809881 hsa-miR-6752-5p 1 0 0
chr10:809693|809881 hsa-miR-6722-3p 1 0 0
chr10:809693|809881 hsa-miR-4649-5p 1 1 0
chr10:809693|809881 hsa-miR-4685-5p 1 0 0
chr10:809693|809881 hsa-miR-6729-5p 1 1 0
chr10:809693|809881 hsa-miR-10396a-3p 1 0 0
chr10:809693|809881 hsa-miR-10396b-3p 1 0 0
chr10:809693|809881 hsa-miR-6799-3p 1 0 0
chr10:809693|809881 hsa-miR-1271-3p 0 1 0
chr10:809693|809881 hsa-miR-5008-3p 1 0 0
chr10:809693|809881 hsa-miR-33b-3p 1 0 0
chr10:809693|809881 hsa-miR-5699-3p 0 1 0
chr10:809693|809881 hsa-miR-616-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:809693|809881
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MLAASALASIVCSPVVGREARKPQLQLASGAHRQACTTTTRRPDTLNWF
Nucleotide Sequence CTGCTGGCGGCCAGCGCCCTCGCCTCGATTGTCTGCAGCCCTGTAGTGGGCCGCGAGGCACGCAAGCCGCAACTACAGCTCGCCAGCGGGGCACACAGACAGGCATGCACCACCACTACCCGTCGCCCGGATACACTGAACTGGTTTTGA
CircID chr10:809693|809881
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MQPCSGPRGTQAATTARQRGTQTGMHHHYPSPGYTELVLK
Nucleotide Sequence CTGCAGCCCTGTAGTGGGCCGCGAGGCACGCAAGCCGCAACTACAGCTCGCCAGCGGGGCACACAGACAGGCATGCACCACCACTACCCGTCGCCCGGATACACTGAACTGGTTTTGAAG
CircID chr10:809693|809881
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MRLACLAAHYRAADNRGEGAGRQQLTARGSCGRSSR
Nucleotide Sequence TTGCGGCTTGCGTGCCTCGCGGCCCACTACAGGGCTGCAGACAATCGAGGCGAGGGCGCTGGCCGCCAGCAGCTCACAGCGCGGGGGTCATGTGGTCGCTCCTCGAGG
CircID chr10:809693|809881
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MCAPLASCSCGLRASRPTTGLQTIEARALAASSSQRGGHVVAPR
Nucleotide Sequence CTGTGTGCCCCGCTGGCGAGCTGTAGTTGCGGCTTGCGTGCCTCGCGGCCCACTACAGGGCTGCAGACAATCGAGGCGAGGGCGCTGGCCGCCAGCAGCTCACAGCGCGGGGGTCATGTGGTCGCTCCTCGA
CircID chr10:809693|809881
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MPVCVPRWRAVVAACVPRGPLQGCRQSRRGRWPPAAHSAGVMWSLLE
Nucleotide Sequence ATGCCTGTCTGTGTGCCCCGCTGGCGAGCTGTAGTTGCGGCTTGCGTGCCTCGCGGCCCACTACAGGGCTGCAGACAATCGAGGCGAGGGCGCTGGCCGCCAGCAGCTCACAGCGCGGGGGTCATGTGGTCGCTCCTCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab