CircRNA Information

General Information
circRNA Basic Information
CircID chr10:86936506|86936740
Strand +
CircType exon
Host Gene ENSG00000173269.12;
Algorism CIRI2;
Sequence CCCAGCCCCAATCTGATCAGACATCATGGACTCGCCCAGCTCTCCTCGGCCTGGGGCTCTGGCCAAGGATGGGCTGGAGGTCATTCAGTTGGTCTGTCTCTTCCCTGGAAACCTTCTGCAAAGATGGTGTGGTGTACGTGGCTTCCCTGTAACCACATGGGGCTTGGCCATTTCTCCATGATGAGAAGGACTGGAATGCTTCTCCGGGCAGGACATGGTCCTAGGAAGCCTGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:86936506|86936740 hsa-miR-383-5p 0 0 1
chr10:86936506|86936740 hsa-miR-383-3p 0 0 1
chr10:86936506|86936740 hsa-miR-384 0 0 1
chr10:86936506|86936740 hsa-miR-484 0 0 1
chr10:86936506|86936740 hsa-miR-539-5p 0 0 1
chr10:86936506|86936740 hsa-miR-539-3p 0 0 1
chr10:86936506|86936740 hsa-miR-588 0 0 1
chr10:86936506|86936740 hsa-miR-591 0 0 1
chr10:86936506|86936740 hsa-miR-766-5p 0 0 1
chr10:86936506|86936740 hsa-miR-766-3p 0 0 1
chr10:86936506|86936740 hsa-miR-298 1 1 1
chr10:86936506|86936740 hsa-miR-1179 0 0 1
chr10:86936506|86936740 hsa-miR-1237-5p 0 0 1
chr10:86936506|86936740 hsa-miR-1237-3p 0 0 1
chr10:86936506|86936740 hsa-miR-1248 0 0 1
chr10:86936506|86936740 hsa-miR-671-5p 0 0 1
chr10:86936506|86936740 hsa-miR-1225-3p 0 1 1
chr10:86936506|86936740 hsa-miR-145-5p 0 0 1
chr10:86936506|86936740 hsa-miR-409-5p 0 0 1
chr10:86936506|86936740 hsa-miR-490-5p 0 0 1
chr10:86936506|86936740 hsa-miR-654-3p 0 0 1
chr10:86936506|86936740 hsa-miR-362-5p 0 0 1
chr10:86936506|86936740 hsa-miR-516a-3p 0 0 1
chr10:86936506|86936740 hsa-miR-151-5p 0 0 1
chr10:86936506|86936740 hsa-miR-762 0 1 0
chr10:86936506|86936740 hsa-miR-1295a 1 0 0
chr10:86936506|86936740 hsa-miR-4441 1 0 0
chr10:86936506|86936740 hsa-miR-4486 0 1 0
chr10:86936506|86936740 hsa-miR-4492 0 1 0
chr10:86936506|86936740 hsa-miR-4518 1 0 0
chr10:86936506|86936740 hsa-miR-1587 1 0 0
chr10:86936506|86936740 hsa-miR-4689 1 0 0
chr10:86936506|86936740 hsa-miR-4739 1 0 0
chr10:86936506|86936740 hsa-miR-4784 0 1 0
chr10:86936506|86936740 hsa-miR-6077 0 1 0
chr10:86936506|86936740 hsa-miR-6081 1 0 0
chr10:86936506|86936740 hsa-miR-6165 1 0 0
chr10:86936506|86936740 hsa-miR-9500 1 1 0
chr10:86936506|86936740 hsa-miR-4435 0 1 0
chr10:86936506|86936740 hsa-miR-6720-5p 0 1 0
chr10:86936506|86936740 hsa-miR-6089 0 1 0
chr10:86936506|86936740 hsa-miR-4655-5p 1 0 0
chr10:86936506|86936740 hsa-miR-3189-5p 0 1 0
chr10:86936506|86936740 hsa-miR-3150b-3p 0 1 0
chr10:86936506|86936740 hsa-miR-5006-5p 1 0 0
chr10:86936506|86936740 hsa-miR-185-5p 0 1 0
chr10:86936506|86936740 hsa-miR-2681-3p 0 1 0
chr10:86936506|86936740 hsa-miR-3619-3p 0 1 0
chr10:86936506|86936740 hsa-miR-4664-3p 1 0 0
chr10:86936506|86936740 hsa-miR-4524a-3p 0 1 0
chr10:86936506|86936740 hsa-miR-329-5p 0 1 0
chr10:86936506|86936740 hsa-miR-4763-3p 1 0 0
chr10:86936506|86936740 hsa-miR-6787-5p 1 0 0
chr10:86936506|86936740 hsa-miR-6726-5p 1 0 0
chr10:86936506|86936740 hsa-miR-3620-5p 1 0 0
chr10:86936506|86936740 hsa-miR-6780b-5p 1 0 0
chr10:86936506|86936740 hsa-miR-4685-5p 1 0 0
chr10:86936506|86936740 hsa-miR-6729-5p 1 1 0
chr10:86936506|86936740 hsa-miR-6889-5p 1 0 0
chr10:86936506|86936740 hsa-miR-939-5p 1 0 0
chr10:86936506|86936740 hsa-miR-7843-5p 1 0 0
chr10:86936506|86936740 hsa-miR-3173-3p 1 0 0
chr10:86936506|86936740 hsa-miR-4646-5p 1 0 0
chr10:86936506|86936740 hsa-miR-6876-5p 1 0 0
chr10:86936506|86936740 hsa-miR-6750-5p 1 0 0
chr10:86936506|86936740 hsa-miR-6512-3p 0 1 0
chr10:86936506|86936740 hsa-miR-4690-3p 0 1 0
chr10:86936506|86936740 hsa-miR-3059-3p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:86936506|86936740
ORF Type ORF1
Protein Length 74
Nucleotide Length 222
Protein Sequence MIRHHGLAQLSSAWGSGQGWAGGHSVGLSLPWKPSAKMVWCTWLPCNHMGLGHFSMMRRTGMLLRAGHGPRKPE
Nucleotide Sequence CTGATCAGACATCATGGACTCGCCCAGCTCTCCTCGGCCTGGGGCTCTGGCCAAGGATGGGCTGGAGGTCATTCAGTTGGTCTGTCTCTTCCCTGGAAACCTTCTGCAAAGATGGTGTGGTGTACGTGGCTTCCCTGTAACCACATGGGGCTTGGCCATTTCTCCATGATGAGAAGGACTGGAATGCTTCTCCGGGCAGGACATGGTCCTAGGAAGCCTGAA
CircID chr10:86936506|86936740
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MDSPSSPRPGALAKDGLEVIQLVCLFPGNLLQRWCGVRGFPVTTWGLAISP
Nucleotide Sequence ATGGACTCGCCCAGCTCTCCTCGGCCTGGGGCTCTGGCCAAGGATGGGCTGGAGGTCATTCAGTTGGTCTGTCTCTTCCCTGGAAACCTTCTGCAAAGATGGTGTGGTGTACGTGGCTTCCCTGTAACCACATGGGGCTTGGCCATTTCTCCATGA
CircID chr10:86936506|86936740
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MGLWPRMGWRSFSWSVSSLETFCKDGVVYVASL
Nucleotide Sequence CTGGGGCTCTGGCCAAGGATGGGCTGGAGGTCATTCAGTTGGTCTGTCTCTTCCCTGGAAACCTTCTGCAAAGATGGTGTGGTGTACGTGGCTTCCCTGTAA
CircID chr10:86936506|86936740
ORF Type ORF4
Protein Length 64
Nucleotide Length 195
Protein Sequence MPGEAFQSFSSWRNGQAPCGYREATYTTPSLQKVSREETDQLNDLQPILGQSPRPRRAGRVHDV
Nucleotide Sequence CTGCCCGGAGAAGCATTCCAGTCCTTCTCATCATGGAGAAATGGCCAAGCCCCATGTGGTTACAGGGAAGCCACGTACACCACACCATCTTTGCAGAAGGTTTCCAGGGAAGAGACAGACCAACTGAATGACCTCCAGCCCATCCTTGGCCAGAGCCCCAGGCCGAGGAGAGCTGGGCGAGTCCATGATGTCTGA
CircID chr10:86936506|86936740
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MSCPEKHSSPSHHGEMAKPHVVTGKPRTPHHLCRRFPGKRQTN
Nucleotide Sequence ATGTCCTGCCCGGAGAAGCATTCCAGTCCTTCTCATCATGGAGAAATGGCCAAGCCCCATGTGGTTACAGGGAAGCCACGTACACCACACCATCTTTGCAGAAGGTTTCCAGGGAAGAGACAGACCAACTGA
CircID chr10:86936506|86936740
ORF Type ORF6
Protein Length 28
Nucleotide Length 84
Protein Sequence MTSSPSLARAPGRGELGESMMSDQIGAG
Nucleotide Sequence ATGACCTCCAGCCCATCCTTGGCCAGAGCCCCAGGCCGAGGAGAGCTGGGCGAGTCCATGATGTCTGATCAGATTGGGGCTGGG
CircID chr10:86936506|86936740
ORF Type ORF7
Protein Length 32
Nucleotide Length 99
Protein Sequence MEKWPSPMWLQGSHVHHTIFAEGFQGRDRPTE
Nucleotide Sequence ATGGAGAAATGGCCAAGCCCCATGTGGTTACAGGGAAGCCACGTACACCACACCATCTTTGCAGAAGGTTTCCAGGGAAGAGACAGACCAACTGAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab