CircRNA Information

General Information
circRNA Basic Information
CircID chr10:86958588|86958772
Strand +
CircType exon
Host Gene ENSG00000173267.12;
Algorism CIRI2;
Sequence CCCCTGCTTGGTCTTTTCCACCGCACCCACCACGCCCTCCTTGGCGATGGAGAAGCCCTTCTTGAAGACATCCATGGTGGGTGTGCAGGGTTGTGCTGCTGCAGGCAGGACGGAGCTGGATCTCCCTGCGAGCTGCGGGCTTGAGCTGGCTCGAGTGCTGCCGCAGCGGCTGTCCCCGATGCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:86958588|86958772 hsa-miR-15a-5p 0 0 1
chr10:86958588|86958772 hsa-miR-15a-3p 0 0 1
chr10:86958588|86958772 hsa-miR-107 0 0 1
chr10:86958588|86958772 hsa-miR-15b-5p 0 0 1
chr10:86958588|86958772 hsa-miR-15b-3p 0 0 1
chr10:86958588|86958772 hsa-miR-136-5p 0 0 1
chr10:86958588|86958772 hsa-miR-136-3p 0 0 1
chr10:86958588|86958772 hsa-miR-195-5p 0 0 1
chr10:86958588|86958772 hsa-miR-195-3p 0 0 1
chr10:86958588|86958772 hsa-miR-424-5p 0 0 1
chr10:86958588|86958772 hsa-miR-424-3p 0 0 1
chr10:86958588|86958772 hsa-miR-497-5p 0 0 1
chr10:86958588|86958772 hsa-miR-497-3p 0 0 1
chr10:86958588|86958772 hsa-miR-675-5p 0 0 1
chr10:86958588|86958772 hsa-miR-675-3p 0 0 1
chr10:86958588|86958772 hsa-miR-541-5p 0 0 1
chr10:86958588|86958772 hsa-miR-541-3p 0 0 1
chr10:86958588|86958772 hsa-miR-542-5p 0 0 1
chr10:86958588|86958772 hsa-miR-1184 0 0 1
chr10:86958588|86958772 hsa-miR-654-5p 0 0 1
chr10:86958588|86958772 hsa-miR-490-5p 0 1 1
chr10:86958588|86958772 hsa-miR-515-5p 0 0 1
chr10:86958588|86958772 hsa-miR-103 0 0 1
chr10:86958588|86958772 hsa-miR-16 0 0 1
chr10:86958588|86958772 hsa-miR-1268 0 0 1
chr10:86958588|86958772 hsa-miR-1268a 0 1 0
chr10:86958588|86958772 hsa-miR-4317 0 1 0
chr10:86958588|86958772 hsa-miR-1268b 0 1 0
chr10:86958588|86958772 hsa-miR-4683 0 1 0
chr10:86958588|86958772 hsa-miR-6124 0 1 0
chr10:86958588|86958772 hsa-miR-12118 0 1 0
chr10:86958588|86958772 hsa-miR-6747-3p 0 1 0
chr10:86958588|86958772 hsa-miR-6820-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6741-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6748-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6858-3p 0 1 0
chr10:86958588|86958772 hsa-miR-767-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6736-3p 0 1 0
chr10:86958588|86958772 hsa-miR-3158-3p 0 1 0
chr10:86958588|86958772 hsa-miR-383-3p 0 1 0
chr10:86958588|86958772 hsa-miR-6732-3p 0 1 0
chr10:86958588|86958772 hsa-miR-5586-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6769b-5p 1 1 0
chr10:86958588|86958772 hsa-miR-6754-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6769a-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6883-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6891-5p 0 1 0
chr10:86958588|86958772 hsa-miR-6785-5p 0 1 0
chr10:86958588|86958772 hsa-miR-4524a-5p 0 1 0
chr10:86958588|86958772 hsa-miR-4524b-5p 0 1 0
chr10:86958588|86958772 hsa-miR-7153-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:86958588|86958772
ORF Type ORF1
Protein Length 46
Nucleotide Length 141
Protein Sequence MLGLFHRTHHALLGDGEALLEDIHGGCAGLCCCRQDGAGSPCELRA
Nucleotide Sequence CTGCTTGGTCTTTTCCACCGCACCCACCACGCCCTCCTTGGCGATGGAGAAGCCCTTCTTGAAGACATCCATGGTGGGTGTGCAGGGTTGTGCTGCTGCAGGCAGGACGGAGCTGGATCTCCCTGCGAGCTGCGGGCTTGA
CircID chr10:86958588|86958772
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MVFSTAPTTPSLAMEKPFLKTSMVGVQGCAAAGRTELDLPASCGLELARVLPQRLSPMP
Nucleotide Sequence TTGGTCTTTTCCACCGCACCCACCACGCCCTCCTTGGCGATGGAGAAGCCCTTCTTGAAGACATCCATGGTGGGTGTGCAGGGTTGTGCTGCTGCAGGCAGGACGGAGCTGGATCTCCCTGCGAGCTGCGGGCTTGAGCTGGCTCGAGTGCTGCCGCAGCGGCTGTCCCCGATGCCT
CircID chr10:86958588|86958772
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MLQAGRSWISLRAAGLSWLECCRSGCPRCL
Nucleotide Sequence CTGCTGCAGGCAGGACGGAGCTGGATCTCCCTGCGAGCTGCGGGCTTGAGCTGGCTCGAGTGCTGCCGCAGCGGCTGTCCCCGATGCCTC
CircID chr10:86958588|86958772
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MQQHNPAHPPWMSSRRASPSPRRAWWVRWKRPSR
Nucleotide Sequence CTGCAGCAGCACAACCCTGCACACCCACCATGGATGTCTTCAAGAAGGGCTTCTCCATCGCCAAGGAGGGCGTGGTGGGTGCGGTGGAAAAGACCAAGCAGG
CircID chr10:86958588|86958772
ORF Type ORF5
Protein Length 55
Nucleotide Length 165
Protein Sequence MRQHSSQLKPAARREIQLRPACSSTTLHTHHGCLQEGLLHRQGGRGGCGGKDQAG
Nucleotide Sequence CTGCGGCAGCACTCGAGCCAGCTCAAGCCCGCAGCTCGCAGGGAGATCCAGCTCCGTCCTGCCTGCAGCAGCACAACCCTGCACACCCACCATGGATGTCTTCAAGAAGGGCTTCTCCATCGCCAAGGAGGGCGTGGTGGGTGCGGTGGAAAAGACCAAGCAGGG
CircID chr10:86958588|86958772
ORF Type ORF6
Protein Length 36
Nucleotide Length 108
Protein Sequence MPAAAQPCTPTMDVFKKGFSIAKEGVVGAVEKTKQG
Nucleotide Sequence CTGCCTGCAGCAGCACAACCCTGCACACCCACCATGGATGTCTTCAAGAAGGGCTTCTCCATCGCCAAGGAGGGCGTGGTGGGTGCGGTGGAAAAGACCAAGCAGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab