CircRNA Information

General Information
circRNA Basic Information
CircID chr10:88938169|88939675
Strand +
CircType exon
Host Gene ENSG00000180139.11;
Algorism CIRI2;
Sequence ATCAAGGAGAAACTGTGTTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACTGCCGCATCCTCATCCTCCCTTGAGAAGAGTTACGAGTTGCCTGATGGGCAAGTGATCACCATCGGAAATGAACGTTTCCGCTGCCCAGAGACCCTGTTCCAGCCATCCTTCATCGGGATGGAGTCTGCTGGCATCCATGAAACCACCTACAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:88938169|88939675 hsa-miR-198 0 0 1
chr10:88938169|88939675 hsa-miR-34a-5p 0 0 1
chr10:88938169|88939675 hsa-miR-34a-3p 0 0 1
chr10:88938169|88939675 hsa-miR-221-5p 0 0 1
chr10:88938169|88939675 hsa-miR-221-3p 0 0 1
chr10:88938169|88939675 hsa-miR-222-5p 0 0 1
chr10:88938169|88939675 hsa-miR-222-3p 0 0 1
chr10:88938169|88939675 hsa-miR-326 0 0 1
chr10:88938169|88939675 hsa-miR-449a 0 0 1
chr10:88938169|88939675 hsa-miR-433-5p 0 0 1
chr10:88938169|88939675 hsa-miR-433-3p 0 0 1
chr10:88938169|88939675 hsa-miR-520g-5p 0 0 1
chr10:88938169|88939675 hsa-miR-520g-3p 0 0 1
chr10:88938169|88939675 hsa-miR-520h 0 0 1
chr10:88938169|88939675 hsa-miR-579-5p 0 0 1
chr10:88938169|88939675 hsa-miR-579-3p 0 0 1
chr10:88938169|88939675 hsa-miR-593-5p 0 0 1
chr10:88938169|88939675 hsa-miR-593-3p 0 0 1
chr10:88938169|88939675 hsa-miR-607 0 0 1
chr10:88938169|88939675 hsa-miR-612 0 0 1
chr10:88938169|88939675 hsa-miR-618 0 0 1
chr10:88938169|88939675 hsa-miR-449b-5p 0 0 1
chr10:88938169|88939675 hsa-miR-449b-3p 0 0 1
chr10:88938169|88939675 hsa-miR-922 0 0 1
chr10:88938169|88939675 hsa-miR-942-5p 0 0 1
chr10:88938169|88939675 hsa-miR-942-3p 0 0 1
chr10:88938169|88939675 hsa-miR-1182 0 1 1
chr10:88938169|88939675 hsa-miR-1200 0 0 1
chr10:88938169|88939675 hsa-miR-1202 0 0 1
chr10:88938169|88939675 hsa-miR-1305 0 0 1
chr10:88938169|88939675 hsa-miR-1255a 0 0 1
chr10:88938169|88939675 hsa-miR-1252-5p 0 0 1
chr10:88938169|88939675 hsa-miR-1252-3p 0 0 1
chr10:88938169|88939675 hsa-miR-513c-5p 0 0 1
chr10:88938169|88939675 hsa-miR-513c-3p 0 0 1
chr10:88938169|88939675 hsa-miR-1321 0 1 1
chr10:88938169|88939675 hsa-miR-1322 0 0 1
chr10:88938169|88939675 hsa-miR-885-3p 0 0 1
chr10:88938169|88939675 hsa-miR-525-5p 0 0 1
chr10:88938169|88939675 hsa-miR-490-5p 0 0 1
chr10:88938169|88939675 hsa-miR-876-3p 0 0 1
chr10:88938169|88939675 hsa-miR-520a-5p 0 0 1
chr10:88938169|88939675 hsa-miR-330-5p 0 0 1
chr10:88938169|88939675 hsa-miR-34c-5p 0 1 1
chr10:88938169|88939675 hsa-miR-1255b 0 0 1
chr10:88938169|88939675 hsa-miR-1285 0 0 1
chr10:88938169|88939675 hsa-miR-1185 0 0 1
chr10:88938169|88939675 hsa-miR-608 1 0 0
chr10:88938169|88939675 hsa-miR-638 1 0 0
chr10:88938169|88939675 hsa-miR-4505 1 0 0
chr10:88938169|88939675 hsa-miR-2392 0 1 0
chr10:88938169|88939675 hsa-miR-4525 0 1 0
chr10:88938169|88939675 hsa-miR-4739 1 1 0
chr10:88938169|88939675 hsa-miR-5787 1 0 0
chr10:88938169|88939675 hsa-miR-6860 0 1 0
chr10:88938169|88939675 hsa-miR-8060 1 0 0
chr10:88938169|88939675 hsa-miR-7106-5p 0 1 0
chr10:88938169|88939675 hsa-miR-6894-5p 1 1 0
chr10:88938169|88939675 hsa-miR-4687-3p 1 0 0
chr10:88938169|88939675 hsa-miR-29b-2-5p 0 1 0
chr10:88938169|88939675 hsa-miR-6728-5p 1 0 0
chr10:88938169|88939675 hsa-miR-6759-5p 1 0 0
chr10:88938169|88939675 hsa-miR-8069 1 0 0
chr10:88938169|88939675 hsa-miR-7845-5p 1 0 0
chr10:88938169|88939675 hsa-miR-503-5p 0 1 0
chr10:88938169|88939675 hsa-miR-3691-5p 0 1 0
chr10:88938169|88939675 hsa-miR-10400-5p 1 0 0
chr10:88938169|88939675 hsa-miR-4763-3p 1 0 0
chr10:88938169|88939675 hsa-miR-5001-5p 1 0 0
chr10:88938169|88939675 hsa-miR-6851-5p 1 0 0
chr10:88938169|88939675 hsa-miR-5189-5p 0 1 0
chr10:88938169|88939675 hsa-miR-6795-5p 1 0 0
chr10:88938169|88939675 hsa-miR-6848-5p 1 0 0
chr10:88938169|88939675 hsa-miR-3187-5p 0 1 0
chr10:88938169|88939675 hsa-miR-6785-5p 1 1 0
chr10:88938169|88939675 hsa-miR-1255b-5p 0 1 0
chr10:88938169|88939675 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:88938169|88939675
ORF Type ORF1
Protein Length 77
Nucleotide Length 231
Protein Sequence MCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKD
Nucleotide Sequence CTGTGTTATGTAGCTCTGGACTTTGAAAATGAGATGGCCACTGCCGCATCCTCATCCTCCCTTGAGAAGAGTTACGAGTTGCCTGATGGGCAAGTGATCACCATCGGAAATGAACGTTTCCGCTGCCCAGAGACCCTGTTCCAGCCATCCTTCATCGGGATGGAGTCTGCTGGCATCCATGAAACCACCTACAACAGCATCATGAAGTGTGATATTGACATCAGGAAGGAC
CircID chr10:88938169|88939675
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MNVSAAQRPCSSHPSSGWSLLASMKPPTTAS
Nucleotide Sequence ATGAACGTTTCCGCTGCCCAGAGACCCTGTTCCAGCCATCCTTCATCGGGATGGAGTCTGCTGGCATCCATGAAACCACCTACAACAGCATCATGA
CircID chr10:88938169|88939675
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MDASRLHPDEGWLEQGLWAAETFISDGDHLPIRQLVTLLKGG
Nucleotide Sequence ATGGATGCCAGCAGACTCCATCCCGATGAAGGATGGCTGGAACAGGGTCTCTGGGCAGCGGAAACGTTCATTTCCGATGGTGATCACTTGCCCATCAGGCAACTCGTAACTCTTCTCAAGGGAGGATGA
CircID chr10:88938169|88939675
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MPADSIPMKDGWNRVSGQRKRSFPMVITCPSGNS
Nucleotide Sequence ATGCCAGCAGACTCCATCCCGATGAAGGATGGCTGGAACAGGGTCTCTGGGCAGCGGAAACGTTCATTTCCGATGGTGATCACTTGCCCATCAGGCAACTCGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab