CircRNA Information

General Information
circRNA Basic Information
CircID chr10:89247538|89247649
Strand -
CircType exon
Host Gene ENSG00000107798.16;
Algorism CIRI2;
Sequence CACATTCATGTTTGTTTCAGGATCCACAGCTGTCAGTTTCCCTCCAGACCCCTCAGAATGCAGGGTCCAGAGAACCAAACAGACCACCAACCCCAAGAACCGCATTTTCATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:89247538|89247649 hsa-miR-326 0 1 1
chr10:89247538|89247649 hsa-miR-422a 0 0 1
chr10:89247538|89247649 hsa-miR-494-5p 0 0 1
chr10:89247538|89247649 hsa-miR-494-3p 0 0 1
chr10:89247538|89247649 hsa-miR-495-5p 0 0 1
chr10:89247538|89247649 hsa-miR-495-3p 0 0 1
chr10:89247538|89247649 hsa-miR-504-5p 0 0 1
chr10:89247538|89247649 hsa-miR-504-3p 0 0 1
chr10:89247538|89247649 hsa-miR-635 0 0 1
chr10:89247538|89247649 hsa-miR-659-5p 0 0 1
chr10:89247538|89247649 hsa-miR-659-3p 0 0 1
chr10:89247538|89247649 hsa-miR-423-5p 1 0 1
chr10:89247538|89247649 hsa-miR-876-3p 0 0 1
chr10:89247538|89247649 hsa-miR-330-5p 0 1 1
chr10:89247538|89247649 hsa-miR-323-5p 0 0 1
chr10:89247538|89247649 hsa-miR-378 0 0 1
chr10:89247538|89247649 hsa-miR-516b 0 0 1
chr10:89247538|89247649 hsa-miR-1293 1 0 0
chr10:89247538|89247649 hsa-miR-378c 0 1 0
chr10:89247538|89247649 hsa-miR-3660 0 1 0
chr10:89247538|89247649 hsa-miR-3911 1 1 0
chr10:89247538|89247649 hsa-miR-4496 0 1 0
chr10:89247538|89247649 hsa-miR-4507 1 0 0
chr10:89247538|89247649 hsa-miR-4513 1 1 0
chr10:89247538|89247649 hsa-miR-4526 0 1 0
chr10:89247538|89247649 hsa-miR-4721 1 0 0
chr10:89247538|89247649 hsa-miR-4752 0 1 0
chr10:89247538|89247649 hsa-miR-5194 1 1 0
chr10:89247538|89247649 hsa-miR-5572 1 1 0
chr10:89247538|89247649 hsa-miR-12119 1 1 0
chr10:89247538|89247649 hsa-miR-6734-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6747-5p 1 0 0
chr10:89247538|89247649 hsa-miR-3934-5p 1 0 0
chr10:89247538|89247649 hsa-miR-3192-5p 1 0 0
chr10:89247538|89247649 hsa-miR-3663-5p 0 1 0
chr10:89247538|89247649 hsa-miR-6796-5p 1 0 0
chr10:89247538|89247649 hsa-miR-4725-5p 0 1 0
chr10:89247538|89247649 hsa-miR-6782-5p 1 0 0
chr10:89247538|89247649 hsa-miR-1226-5p 1 0 0
chr10:89247538|89247649 hsa-miR-4738-3p 0 1 0
chr10:89247538|89247649 hsa-miR-193b-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6834-5p 1 0 0
chr10:89247538|89247649 hsa-miR-149-3p 1 0 0
chr10:89247538|89247649 hsa-miR-516b-5p 0 1 0
chr10:89247538|89247649 hsa-miR-518c-5p 1 1 0
chr10:89247538|89247649 hsa-miR-888-3p 0 1 0
chr10:89247538|89247649 hsa-miR-6752-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6803-5p 1 0 0
chr10:89247538|89247649 hsa-miR-7110-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6751-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6774-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6780a-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6797-5p 1 1 0
chr10:89247538|89247649 hsa-miR-6795-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6846-5p 1 0 0
chr10:89247538|89247649 hsa-miR-6887-5p 1 0 0
chr10:89247538|89247649 hsa-miR-3940-5p 1 0 0
chr10:89247538|89247649 hsa-miR-1914-3p 1 0 0
chr10:89247538|89247649 hsa-miR-6855-5p 1 1 0
chr10:89247538|89247649 hsa-miR-6753-3p 0 1 0
chr10:89247538|89247649 hsa-miR-7107-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:89247538|89247649
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MFVSGSTAVSFPPDPSECRVQRTKQTTNPKNRIFI
Nucleotide Sequence ATGTTTGTTTCAGGATCCACAGCTGTCAGTTTCCCTCCAGACCCCTCAGAATGCAGGGTCCAGAGAACCAAACAGACCACCAACCCCAAGAACCGCATTTTCATT
CircID chr10:89247538|89247649
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MFQDPQLSVSLQTPQNAGSREPNRPPTPRTAFS
Nucleotide Sequence TTGTTTCAGGATCCACAGCTGTCAGTTTCCCTCCAGACCCCTCAGAATGCAGGGTCCAGAGAACCAAACAGACCACCAACCCCAAGAACCGCATTTTCA
CircID chr10:89247538|89247649
ORF Type ORF3
Protein Length 37
Nucleotide Length 111
Protein Sequence MKMRFLGLVVCLVLWTLHSEGSGGKLTAVDPETNMNV
Nucleotide Sequence ATGAAAATGCGGTTCTTGGGGTTGGTGGTCTGTTTGGTTCTCTGGACCCTGCATTCTGAGGGGTCTGGAGGGAAACTGACAGCTGTGGATCCTGAAACAAACATGAATGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab