CircRNA Information

General Information
circRNA Basic Information
CircID chr10:93381219|93389154
Strand -
CircType exon
Host Gene ENSG00000138119.16;
Algorism find_circ;CIRI2;DCC;
Sequence TAAACACAGGAGAAACAGAGGTAGGCTTTGTTCCAACGTTTGGACCTTGTTACCTGAATCTTTATGGAAGCCCCAGAGAGTACACGGGATTCCCAGACCCCTATGATGAGCTGAATACTGGAAAGGGGGAAGGAGTTGCCTACAGAGGCAGGATCTTGGTTGAATTAGCCACTTTTCTTGAGAAGACACCACCAGATAAAAAGCTTGAGCCCATTTCAAATGATGACCTGCTGGTTGTTGAGGTAAATGTTAAAGTAAATACCAGCGAAGGCGGAAGTACAGCCTGTCTGCCGTGTTTCATTCAGCCACCATGTTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGACACCACCTGTAAGCCTTTGGCATCAACAACTCAGTACAGCCGTGCTGTATTTGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:93381219|93389154 hsa-let-7b-5p 0 0 1
chr10:93381219|93389154 hsa-let-7b-3p 0 0 1
chr10:93381219|93389154 hsa-let-7c-5p 0 0 1
chr10:93381219|93389154 hsa-let-7c-3p 0 0 1
chr10:93381219|93389154 hsa-let-7d-5p 0 0 1
chr10:93381219|93389154 hsa-let-7d-3p 0 0 1
chr10:93381219|93389154 hsa-let-7e-5p 0 0 1
chr10:93381219|93389154 hsa-let-7e-3p 0 0 1
chr10:93381219|93389154 hsa-miR-96-5p 0 0 1
chr10:93381219|93389154 hsa-miR-96-3p 0 0 1
chr10:93381219|93389154 hsa-miR-98-5p 0 0 1
chr10:93381219|93389154 hsa-miR-98-3p 0 0 1
chr10:93381219|93389154 hsa-miR-182-5p 0 0 1
chr10:93381219|93389154 hsa-miR-182-3p 0 0 1
chr10:93381219|93389154 hsa-miR-183-5p 0 0 1
chr10:93381219|93389154 hsa-miR-183-3p 0 0 1
chr10:93381219|93389154 hsa-miR-200b-5p 0 0 1
chr10:93381219|93389154 hsa-miR-200b-3p 0 0 1
chr10:93381219|93389154 hsa-let-7g-5p 0 0 1
chr10:93381219|93389154 hsa-let-7g-3p 0 0 1
chr10:93381219|93389154 hsa-let-7i-5p 0 0 1
chr10:93381219|93389154 hsa-let-7i-3p 0 0 1
chr10:93381219|93389154 hsa-miR-200c-5p 0 0 1
chr10:93381219|93389154 hsa-miR-200c-3p 0 0 1
chr10:93381219|93389154 hsa-miR-375-5p 0 0 1
chr10:93381219|93389154 hsa-miR-375-3p 0 0 1
chr10:93381219|93389154 hsa-miR-346 0 0 1
chr10:93381219|93389154 hsa-miR-429 0 0 1
chr10:93381219|93389154 hsa-miR-492 0 0 1
chr10:93381219|93389154 hsa-miR-558 0 0 1
chr10:93381219|93389154 hsa-miR-573 0 0 1
chr10:93381219|93389154 hsa-miR-602 0 1 1
chr10:93381219|93389154 hsa-miR-632 0 0 1
chr10:93381219|93389154 hsa-miR-634 0 0 1
chr10:93381219|93389154 hsa-miR-1271-5p 0 0 1
chr10:93381219|93389154 hsa-miR-1271-3p 0 0 1
chr10:93381219|93389154 hsa-miR-1298-5p 0 0 1
chr10:93381219|93389154 hsa-miR-1298-3p 0 0 1
chr10:93381219|93389154 hsa-miR-1243 0 0 1
chr10:93381219|93389154 hsa-miR-1272 0 0 1
chr10:93381219|93389154 hsa-miR-1292-5p 0 0 1
chr10:93381219|93389154 hsa-miR-1292-3p 0 0 1
chr10:93381219|93389154 hsa-miR-1322 0 0 1
chr10:93381219|93389154 hsa-miR-196a-3p 0 1 1
chr10:93381219|93389154 hsa-miR-214-5p 0 1 1
chr10:93381219|93389154 hsa-miR-671-5p 1 1 1
chr10:93381219|93389154 hsa-miR-875-3p 0 0 1
chr10:93381219|93389154 hsa-miR-556-5p 0 0 1
chr10:93381219|93389154 hsa-miR-220b 0 0 1
chr10:93381219|93389154 hsa-let-7a 0 0 1
chr10:93381219|93389154 hsa-let-7f 0 0 1
chr10:93381219|93389154 hsa-miR-514 0 0 1
chr10:93381219|93389154 hsa-miR-658 1 1 0
chr10:93381219|93389154 hsa-miR-920 0 1 0
chr10:93381219|93389154 hsa-miR-4257 0 1 0
chr10:93381219|93389154 hsa-miR-4288 0 1 0
chr10:93381219|93389154 hsa-miR-4458 0 1 0
chr10:93381219|93389154 hsa-miR-4471 0 1 0
chr10:93381219|93389154 hsa-miR-3978 0 1 0
chr10:93381219|93389154 hsa-miR-4710 1 0 0
chr10:93381219|93389154 hsa-miR-8059 0 1 0
chr10:93381219|93389154 hsa-miR-3157-5p 0 1 0
chr10:93381219|93389154 hsa-miR-4433a-3p 1 0 0
chr10:93381219|93389154 hsa-miR-4768-3p 0 1 0
chr10:93381219|93389154 hsa-miR-6089 1 0 0
chr10:93381219|93389154 hsa-miR-6746-5p 1 1 0
chr10:93381219|93389154 hsa-miR-6768-5p 0 1 0
chr10:93381219|93389154 hsa-miR-6786-5p 1 0 0
chr10:93381219|93389154 hsa-miR-659-5p 0 1 0
chr10:93381219|93389154 hsa-miR-3160-3p 0 1 0
chr10:93381219|93389154 hsa-miR-4684-3p 0 1 0
chr10:93381219|93389154 hsa-miR-7850-5p 0 1 0
chr10:93381219|93389154 hsa-miR-5195-5p 0 1 0
chr10:93381219|93389154 hsa-miR-1911-5p 1 0 0
chr10:93381219|93389154 hsa-miR-4797-3p 0 1 0
chr10:93381219|93389154 hsa-miR-514a-3p 0 1 0
chr10:93381219|93389154 hsa-miR-6756-5p 1 0 0
chr10:93381219|93389154 hsa-miR-6736-5p 1 0 0
chr10:93381219|93389154 hsa-miR-6762-5p 1 0 0
chr10:93381219|93389154 hsa-miR-6876-3p 0 1 0
chr10:93381219|93389154 hsa-miR-5699-3p 0 1 0
chr10:93381219|93389154 hsa-miR-514b-3p 0 1 0
chr10:93381219|93389154 hsa-miR-499b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:93381219|93389154
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MKHGRQAVLPPSLVFTLTFTSTTSRSSFEMGSSFLSGGVFSRKVANSTKILPL*
Nucleotide Sequence ATGAAACACGGCAGACAGGCTGTACTTCCGCCTTCGCTGGTATTTACTTTAACATTTACCTCAACAACCAGCAGGTCATCATTTGAAATGGGCTCAAGCTTTTTATCTGGTGGTGTCTTCTCAAGAAAAGTGGCTAATTCAACCAAGATCCTGCCTCTGTAG
CircID chr10:93381219|93389154
ORF Type ORF2
Protein Length 93
Nucleotide Length 279
Protein Sequence LVELATFLEKTPPDKKLEPISNDDLLVVEVNVKVNTSEGGSTACLPCFIQPPCCKMLVRPFSLKSALGTMATSLTPPVSLWHQQLSTAVLYLM
Nucleotide Sequence TTGGTTGAATTAGCCACTTTTCTTGAGAAGACACCACCAGATAAAAAGCTTGAGCCCATTTCAAATGATGACCTGCTGGTTGTTGAGGTAAATGTTAAAGTAAATACCAGCGAAGGCGGAAGTACAGCCTGTCTGCCGTGTTTCATTCAGCCACCATGTTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGACACCACCTGTAAGCCTTTGGCATCAACAACTCAGTACAGCCGTGCTGTATTTGATG
CircID chr10:93381219|93389154
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAVFD
Nucleotide Sequence ATGTTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGACACCACCTGTAAGCCTTTGGCATCAACAACTCAGTACAGCCGTGCTGTATTTGAT
CircID chr10:93381219|93389154
ORF Type ORF4
Protein Length 73
Nucleotide Length 219
Protein Sequence LKWAQAFYLVVSSQEKWLIQPRSCLCRQLLPPFQYSAHHRGLGIPCTLWGFHKDSGNKVQTLEQSLPLFLLCL
Nucleotide Sequence TTGAAATGGGCTCAAGCTTTTTATCTGGTGGTGTCTTCTCAAGAAAAGTGGCTAATTCAACCAAGATCCTGCCTCTGTAGGCAACTCCTTCCCCCTTTCCAGTATTCAGCTCATCATAGGGGTCTGGGAATCCCGTGTACTCTCTGGGGCTTCCATAAAGATTCAGGTAACAAGGTCCAAACGTTGGAACAAAGCCTACCTCTGTTTCTCCTGTGTTTA
CircID chr10:93381219|93389154
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MNETRQTGCTSAFAGISFQYSAHHRGLGIPCTLWGFHKDSGNKVQTLEQSLPLFLLCL
Nucleotide Sequence CTGAATGAAACACGGCAGACAGGCTGTACTTCCGCCTTCGCTGGTATTTCTTTCCAGTATTCAGCTCATCATAGGGGTCTGGGAATCCCGTGTACTCTCTGGGGCTTCCATAAAGATTCAGGTAACAAGGTCCAAACGTTGGAACAAAGCCTACCTCTGTTTCTCCTGTGTTTA
CircID chr10:93381219|93389154
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MKHGRQAVLPPSLVFLSSIQLIIGVWESRVLSGASIKIQVTRSKRWNKAYLCFSCV
Nucleotide Sequence ATGAAACACGGCAGACAGGCTGTACTTCCGCCTTCGCTGGTATTTCTTTCCAGTATTCAGCTCATCATAGGGGTCTGGGAATCCCGTGTACTCTCTGGGGCTTCCATAAAGATTCAGGTAACAAGGTCCAAACGTTGGAACAAAGCCTACCTCTGTTTCTCCTGTGTT
CircID chr10:93381219|93389154
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MERNTSEGGSTACLPCFIQPPCCKMLVRPFSLKSALGTMATSLTPPVSLWHQQLSTAVLYLM
Nucleotide Sequence CTGGAAAGAAATACCAGCGAAGGCGGAAGTACAGCCTGTCTGCCGTGTTTCATTCAGCCACCATGTTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGACACCACCTGTAAGCCTTTGGCATCAACAACTCAGTACAGCCGTGCTGTATTTGATG
CircID chr10:93381219|93389154
ORF Type ORF4
Protein Length 83
Nucleotide Length 249
Protein Sequence MNLYGSPREYTGFPDPYDELNTGKKYQRRRKYSLSAVFHSATMLQDVGEAIQFEVSIGNYGNKFDTTCKPLASTTQYSRAVFD
Nucleotide Sequence CTGAATCTTTATGGAAGCCCCAGAGAGTACACGGGATTCCCAGACCCCTATGATGAGCTGAATACTGGAAAGAAATACCAGCGAAGGCGGAAGTACAGCCTGTCTGCCGTGTTTCATTCAGCCACCATGTTGCAAGATGTTGGTGAGGCCATTCAGTTTGAAGTCAGCATTGGGAACTATGGCAACAAGTTTGACACCACCTGTAAGCCTTTGGCATCAACAACTCAGTACAGCCGTGCTGTATTTGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr10:93381219|93389154 U2AF2 6 1 0
chr10:93381219|93389154 FUS 0 1 0
chr10:93381219|93389154 SRSF3 1 0 0
chr10:93381219|93389154 RBM47 2 1 3
chr10:93381219|93389154 HNRNPC 2 0 0
chr10:93381219|93389154 ACIN1 2 0 11
chr10:93381219|93389154 CSTF2T 1 0 3
chr10:93381219|93389154 DDX54 2 1 14
chr10:93381219|93389154 FBL 0 1 0
chr10:93381219|93389154 TAF15 1 0 0
chr10:93381219|93389154 PTBP1 3 0 1
chr10:93381219|93389154 IGF2BP2 0 0 4
chr10:93381219|93389154 EIF4A3 2 2 6
chr10:93381219|93389154 AGO2 0 1 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab