CircRNA Information

General Information
circRNA Basic Information
CircID chr10:96592083|96592370
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGCTGCAAAACCACACACTATTCTTTGAAGGAGGAACACAGAAAACCAACTTACTTCCTGGGGCATTTGGGAGAGGAATCTAAAAATCCTAGTGATATGGCAATGACTAGAACCTTTTTTTTTTTTGTAACAACAAAGCTAAAAGGGGATGTGTAACTTAGCTTGACTTGTAAAAATATTCGTAGAAGTCATCTATATTTTACCACTTTGTGTAACTAAGGCAGAGCATTAGAGATTATTCACATCATTAAATATGTCCAGTTAAATTATTAGATTACAACACCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:96592083|96592370 hsa-miR-205-5p 0 0 1
chr10:96592083|96592370 hsa-miR-205-3p 0 0 1
chr10:96592083|96592370 hsa-miR-216a-5p 0 0 1
chr10:96592083|96592370 hsa-miR-216a-3p 0 0 1
chr10:96592083|96592370 hsa-miR-150-5p 0 0 1
chr10:96592083|96592370 hsa-miR-150-3p 0 0 1
chr10:96592083|96592370 hsa-miR-186-5p 0 0 1
chr10:96592083|96592370 hsa-miR-186-3p 0 0 1
chr10:96592083|96592370 hsa-miR-155-5p 0 0 1
chr10:96592083|96592370 hsa-miR-155-3p 0 0 1
chr10:96592083|96592370 hsa-miR-382-5p 0 0 1
chr10:96592083|96592370 hsa-miR-382-3p 0 0 1
chr10:96592083|96592370 hsa-miR-520g-5p 0 0 1
chr10:96592083|96592370 hsa-miR-520g-3p 0 0 1
chr10:96592083|96592370 hsa-miR-520h 0 0 1
chr10:96592083|96592370 hsa-miR-507 0 0 1
chr10:96592083|96592370 hsa-miR-554 0 0 1
chr10:96592083|96592370 hsa-miR-557 0 0 1
chr10:96592083|96592370 hsa-miR-616-5p 0 0 1
chr10:96592083|96592370 hsa-miR-616-3p 0 0 1
chr10:96592083|96592370 hsa-miR-617 0 0 1
chr10:96592083|96592370 hsa-miR-648 0 0 1
chr10:96592083|96592370 hsa-miR-1301-5p 0 0 1
chr10:96592083|96592370 hsa-miR-1301-3p 0 0 1
chr10:96592083|96592370 hsa-miR-216b-5p 0 0 1
chr10:96592083|96592370 hsa-miR-216b-3p 0 0 1
chr10:96592083|96592370 hsa-miR-1290 0 0 1
chr10:96592083|96592370 hsa-miR-1257 0 0 1
chr10:96592083|96592370 hsa-miR-532-3p 0 0 1
chr10:96592083|96592370 hsa-miR-524-5p 0 0 1
chr10:96592083|96592370 hsa-miR-34c-3p 0 0 1
chr10:96592083|96592370 hsa-miR-582-3p 0 0 1
chr10:96592083|96592370 hsa-miR-450b-5p 0 0 1
chr10:96592083|96592370 hsa-miR-520d-5p 0 0 1
chr10:96592083|96592370 hsa-miR-105 0 0 1
chr10:96592083|96592370 hsa-miR-644 0 0 1
chr10:96592083|96592370 hsa-miR-147 0 0 1
chr10:96592083|96592370 hsa-miR-365 0 0 1
chr10:96592083|96592370 hsa-miR-147a 0 1 0
chr10:96592083|96592370 hsa-miR-612 1 0 0
chr10:96592083|96592370 hsa-miR-1538 1 0 0
chr10:96592083|96592370 hsa-miR-2278 1 0 0
chr10:96592083|96592370 hsa-miR-6860 1 0 0
chr10:96592083|96592370 hsa-miR-3189-5p 1 0 0
chr10:96592083|96592370 hsa-miR-6845-3p 1 0 0
chr10:96592083|96592370 hsa-miR-182-3p 0 1 0
chr10:96592083|96592370 hsa-miR-5004-3p 1 0 0
chr10:96592083|96592370 hsa-miR-619-3p 1 0 0
chr10:96592083|96592370 hsa-miR-7111-3p 0 1 0
chr10:96592083|96592370 hsa-miR-4638-3p 1 0 0
chr10:96592083|96592370 hsa-miR-6882-5p 0 1 0
chr10:96592083|96592370 hsa-miR-4796-3p 0 1 0
chr10:96592083|96592370 hsa-miR-329-5p 1 1 0
chr10:96592083|96592370 hsa-miR-6800-3p 1 0 0
chr10:96592083|96592370 hsa-miR-3059-5p 1 1 0
chr10:96592083|96592370 hsa-miR-6817-5p 1 0 0
chr10:96592083|96592370 hsa-miR-376a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:96592083|96592370
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MQNHTLFFEGGTQKTNLLPGAFGRGI
Nucleotide Sequence CTGCAAAACCACACACTATTCTTTGAAGGAGGAACACAGAAAACCAACTTACTTCCTGGGGCATTTGGGAGAGGAATCTAA
CircID chr10:96592083|96592370
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MKEEHRKPTYFLGHLGEESKNPSDMAMTRTFFFFVTTKLKGDV
Nucleotide Sequence TTGAAGGAGGAACACAGAAAACCAACTTACTTCCTGGGGCATTTGGGAGAGGAATCTAAAAATCCTAGTGATATGGCAATGACTAGAACCTTTTTTTTTTTTGTAACAACAAAGCTAAAAGGGGATGTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab