CircRNA Information

General Information
circRNA Basic Information
CircID chr10:97458880|97459419
Strand -
CircType exon
Host Gene ENSG00000155229.19;
Algorism CIRI2;
Sequence CTGTGGTTTGTACGGCAGCAGCACAGGGGTGGGCAGGCGAGTGAGAGCATGCATGCACTGCAGTGCGGCGATCCGGACAGCCTGGAACACAACCACAAGGAGGTGAGAGCATGCCCAGGGAGAGATGCTGGTGCCTAAGAGTTGCTGGGGCTCAACGCACCATGGAAGGGCTAGAGCTGAGGTTCAGAAACTTGGTGACGAGGGTGTCCACGTGAAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr10:97458880|97459419 hsa-miR-148a-5p 0 0 1
chr10:97458880|97459419 hsa-miR-148a-3p 0 0 1
chr10:97458880|97459419 hsa-miR-152-5p 0 0 1
chr10:97458880|97459419 hsa-miR-152-3p 0 0 1
chr10:97458880|97459419 hsa-miR-148b-5p 0 0 1
chr10:97458880|97459419 hsa-miR-148b-3p 0 0 1
chr10:97458880|97459419 hsa-miR-412-5p 0 0 1
chr10:97458880|97459419 hsa-miR-412-3p 0 0 1
chr10:97458880|97459419 hsa-miR-612 1 1 1
chr10:97458880|97459419 hsa-miR-634 0 1 1
chr10:97458880|97459419 hsa-miR-675-5p 0 0 1
chr10:97458880|97459419 hsa-miR-675-3p 0 0 1
chr10:97458880|97459419 hsa-miR-1226-5p 0 0 1
chr10:97458880|97459419 hsa-miR-1226-3p 0 0 1
chr10:97458880|97459419 hsa-miR-1229-5p 0 0 1
chr10:97458880|97459419 hsa-miR-1229-3p 0 0 1
chr10:97458880|97459419 hsa-miR-1251-5p 0 0 1
chr10:97458880|97459419 hsa-miR-1251-3p 0 0 1
chr10:97458880|97459419 hsa-miR-1225-3p 0 0 1
chr10:97458880|97459419 hsa-miR-140-3p 0 0 1
chr10:97458880|97459419 hsa-miR-338-3p 0 0 1
chr10:97458880|97459419 hsa-miR-509-3-5p 0 0 1
chr10:97458880|97459419 hsa-miR-509-5p 0 0 1
chr10:97458880|97459419 hsa-miR-1233 0 0 1
chr10:97458880|97459419 hsa-miR-1285 0 0 1
chr10:97458880|97459419 hsa-miR-129-3p 0 0 1
chr10:97458880|97459419 hsa-miR-453 0 0 1
chr10:97458880|97459419 hsa-miR-326 1 0 0
chr10:97458880|97459419 hsa-miR-346 1 0 0
chr10:97458880|97459419 hsa-miR-596 1 0 0
chr10:97458880|97459419 hsa-miR-636 1 0 0
chr10:97458880|97459419 hsa-miR-657 1 0 0
chr10:97458880|97459419 hsa-miR-1913 1 0 0
chr10:97458880|97459419 hsa-miR-1976 1 0 0
chr10:97458880|97459419 hsa-miR-4323 0 1 0
chr10:97458880|97459419 hsa-miR-4292 0 1 0
chr10:97458880|97459419 hsa-miR-3615 1 0 0
chr10:97458880|97459419 hsa-miR-4741 1 1 0
chr10:97458880|97459419 hsa-miR-5684 1 0 0
chr10:97458880|97459419 hsa-miR-9899 1 0 0
chr10:97458880|97459419 hsa-miR-146a-3p 0 1 0
chr10:97458880|97459419 hsa-miR-143-5p 1 1 0
chr10:97458880|97459419 hsa-miR-17-3p 0 1 0
chr10:97458880|97459419 hsa-miR-214-5p 1 1 0
chr10:97458880|97459419 hsa-miR-668-3p 1 1 0
chr10:97458880|97459419 hsa-miR-6836-3p 1 0 0
chr10:97458880|97459419 hsa-miR-6861-5p 1 0 0
chr10:97458880|97459419 hsa-miR-6720-5p 1 0 0
chr10:97458880|97459419 hsa-miR-766-3p 1 0 0
chr10:97458880|97459419 hsa-miR-593-5p 1 1 0
chr10:97458880|97459419 hsa-miR-4761-3p 1 0 0
chr10:97458880|97459419 hsa-miR-3189-5p 1 0 0
chr10:97458880|97459419 hsa-miR-6787-3p 1 1 0
chr10:97458880|97459419 hsa-miR-6796-3p 1 0 0
chr10:97458880|97459419 hsa-miR-4655-3p 0 1 0
chr10:97458880|97459419 hsa-miR-6728-3p 1 0 0
chr10:97458880|97459419 hsa-miR-939-3p 1 1 0
chr10:97458880|97459419 hsa-miR-4763-5p 1 1 0
chr10:97458880|97459419 hsa-miR-6803-3p 1 0 0
chr10:97458880|97459419 hsa-miR-7113-3p 0 1 0
chr10:97458880|97459419 hsa-miR-6743-3p 1 0 0
chr10:97458880|97459419 hsa-miR-6499-3p 1 0 0
chr10:97458880|97459419 hsa-miR-1910-5p 1 0 0
chr10:97458880|97459419 hsa-miR-106b-3p 1 1 0
chr10:97458880|97459419 hsa-miR-6865-3p 0 1 0
chr10:97458880|97459419 hsa-miR-328-3p 1 0 0
chr10:97458880|97459419 hsa-miR-1285-5p 0 1 0
chr10:97458880|97459419 hsa-miR-1298-5p 0 1 0
chr10:97458880|97459419 hsa-miR-6789-3p 1 0 0
chr10:97458880|97459419 hsa-miR-6862-5p 0 1 0
chr10:97458880|97459419 hsa-miR-3187-5p 1 0 0
chr10:97458880|97459419 hsa-miR-6724-5p 1 0 0
chr10:97458880|97459419 hsa-miR-6791-5p 1 0 0
chr10:97458880|97459419 hsa-miR-6805-3p 1 0 0
chr10:97458880|97459419 hsa-miR-9851-3p 1 1 0
chr10:97458880|97459419 hsa-miR-6751-3p 1 0 0
chr10:97458880|97459419 hsa-miR-6823-3p 1 0 0
chr10:97458880|97459419 hsa-miR-330-5p 1 0 0
chr10:97458880|97459419 hsa-miR-7156-5p 1 0 0
chr10:97458880|97459419 hsa-miR-6814-3p 1 0 0
chr10:97458880|97459419 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr10:97458880|97459419
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence LWFVRQQHRGGQASESMHALQCGDPDSLEHNHKEVRACPGRDAGA
Nucleotide Sequence CTGTGGTTTGTACGGCAGCAGCACAGGGGTGGGCAGGCGAGTGAGAGCATGCATGCACTGCAGTGCGGCGATCCGGACAGCCTGGAACACAACCACAAGGAGGTGAGAGCATGCCCAGGGAGAGATGCTGGTGCCTAA
CircID chr10:97458880|97459419
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MYGSSTGVGRRVRACMHCSAAIRTAWNTTTRR
Nucleotide Sequence TTGTACGGCAGCAGCACAGGGGTGGGCAGGCGAGTGAGAGCATGCATGCACTGCAGTGCGGCGATCCGGACAGCCTGGAACACAACCACAAGGAGGTGA
CircID chr10:97458880|97459419
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MLVPKSCWGSTHHGRARAEVQKLGDEGVHVK
Nucleotide Sequence ATGCTGGTGCCTAAGAGTTGCTGGGGCTCAACGCACCATGGAAGGGCTAGAGCTGAGGTTCAGAAACTTGGTGACGAGGGTGTCCACGTGAAG
CircID chr10:97458880|97459419
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MPRERCWCLRVAGAQRTMEGLELRFRNLVTRVST
Nucleotide Sequence ATGCCCAGGGAGAGATGCTGGTGCCTAAGAGTTGCTGGGGCTCAACGCACCATGGAAGGGCTAGAGCTGAGGTTCAGAAACTTGGTGACGAGGGTGTCCACGTGA
CircID chr10:97458880|97459419
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MWLCSRLSGSPHCSACMLSLACPPLCCCRTNH
Nucleotide Sequence TTGTGGTTGTGTTCCAGGCTGTCCGGATCGCCGCACTGCAGTGCATGCATGCTCTCACTCGCCTGCCCACCCCTGTGCTGCTGCCGTACAAACCAC
CircID chr10:97458880|97459419
ORF Type ORF6
Protein Length 39
Nucleotide Length 117
Protein Sequence MGMLSPPCGCVPGCPDRRTAVHACSHSPAHPCAAAVQTT
Nucleotide Sequence CTGGGCATGCTCTCACCTCCTTGTGGTTGTGTTCCAGGCTGTCCGGATCGCCGCACTGCAGTGCATGCATGCTCTCACTCGCCTGCCCACCCCTGTGCTGCTGCCGTACAAACCACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab